Mesorhizobium erdmanii: EB233_16090
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Entry
EB233_16090 CDS
T06791
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
merd
Mesorhizobium erdmanii
Pathway
merd03030
DNA replication
merd03410
Base excision repair
merd03420
Nucleotide excision repair
merd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
merd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EB233_16090 (ligA)
03410 Base excision repair
EB233_16090 (ligA)
03420 Nucleotide excision repair
EB233_16090 (ligA)
03430 Mismatch repair
EB233_16090 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
merd03032
]
EB233_16090 (ligA)
03400 DNA repair and recombination proteins [BR:
merd03400
]
EB233_16090 (ligA)
Enzymes [BR:
merd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EB233_16090 (ligA)
DNA replication proteins [BR:
merd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EB233_16090 (ligA)
DNA repair and recombination proteins [BR:
merd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EB233_16090 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EB233_16090 (ligA)
MMR (mismatch excision repair)
DNA ligase
EB233_16090 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EB233_16090 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
DUF6981
DUF4796_N
Zn_ribbon_PaaD
FdhE_central
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
QKC76843
UniProt:
A0A6M7UKX7
LinkDB
All DBs
Position
3255010..3257214
Genome browser
AA seq
734 aa
AA seq
DB search
MAEKPVDSLSESEAEAELRRLAEEIAVHDVRYHAEDAPTITDAEYDALRQRNLAIEARFP
DLVRDDSPSRRVGAAPAEGFAKVRHAVPMLSLAKAYTDEDVADFIERGRRFFDRDRDLDI
AFTAEPKIDGLSASLRYENGVFVQGATRGDGTVGEDITANLRTIADIPARLKGSGWPDVI
EIRGEVYMTYAEFEALKARSAAAGGQDYVNPRNTAAGSLRQKDASVTAARNLKFFAYAWG
FTTADPAPTQYDAVQKFAEWGFKVSPLMVRAKSVEDLIAHYHLIEEQRSSLGYDIDGVVY
KVDQLELQRRWGFVTGEPRWAVAHKFPAEQAMTSVQKIDIQVGRTGTLAPVARLAPVTVG
GVVVENVTLHNEDYIKGFDSNGQPIRDGIDVRIGDTVVIQRAGDVIPQIVSVVIDKRPAD
AVPYEFPHICPVCGSPATREINEKSGKEDSRRRCTGELICGAQAVERLRHFVSRGALDIE
GLGAENIDTFFNAGLIKTAADIFTLRDRRPAVTKALAERREEQARQREAVSGKTRKNVRS
VEDRNYEGLDKLFAAIDSRREPELDRFIFALGIRHIGETTAAVLAKTFSTIEELIRVGKE
TAAAADPHTVFPSVNGIGDTVIGALRDFFGNERNDDVLDKLLEQVKPKPYVVTVSADSEV
AGKTIVFTGTLEKMTRSEAKAMAERLGAKVAGSVSAKTDLLVAGPGAGSKLKLASELGVE
VIDEDTWLQRVGKS
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaaaacctgtcgattcgctcagcgaaagcgaggctgaagccgagctccggcgg
ctggccgaagagatcgccgtgcacgatgtgcgctaccacgccgaagacgcgcccacgatc
acggacgcggaatatgacgcgctgcggcagcgcaacctcgccatcgaggcgcgctttccc
gacctggtgcgcgacgattcgccgtcgcgcagggtgggtgccgcgccggcggaaggtttc
gccaaggtgcgccatgccgtgccgatgctcagcctcgccaaggcctataccgacgaggac
gtcgctgatttcatcgagcgcggccggcgcttcttcgatcgcgatagggacctcgacatc
gctttcaccgccgagccgaagatcgacggactgtcggcttcgctgcgctatgagaatggc
gtgttcgtgcagggcgcaacgcgcggcgacggcactgtgggcgaagacatcaccgccaat
ctccggaccatcgccgacatccccgccaggctgaaaggctctggctggcctgatgtcatc
gagatacgcggcgaggtctacatgacctatgccgagttcgaggcgctgaaggcgcgctcg
gcggcggccggcggccaggattacgtcaatccacgcaacacggcggccggttcgctgcgc
cagaaggatgcctccgtcaccgccgctcgcaacctcaaattcttcgcctatgcctggggc
ttcacgacagcggatccggcgccaacccagtacgatgccgtgcagaaattcgccgaatgg
ggcttcaaggtcagtcctttgatggtgcgggcgaagtcggtcgaggaccttattgcgcat
taccatctgatcgaggagcagcgctcctcgctcggctatgacatagatggcgtcgtctac
aaggtcgaccagttggaactgcagcgccgatggggctttgttaccggcgagccgcgctgg
gccgttgcgcataaattcccggccgaacaggcaatgacatcagttcagaagatcgacatc
caggtcggacgcaccggtacgctggcgccggtcgcgcggcttgcacccgtcaccgtcggc
ggtgtcgtggtcgagaatgtcacgctgcacaatgaggactacatcaagggtttcgacagc
aacggccagccgatccgcgacggcatcgacgttcgcatcggcgacacggtggtgatccag
cgggcaggggatgtcattccgcagatcgtcagcgtcgtcatcgacaagcgcccggccgat
gccgtgccttacgaattcccgcatatttgtcctgtctgcggctcgcccgccacgcgcgag
atcaacgagaagtccggcaaggaggactcgcgccggcgctgcaccggcgagctgatctgc
ggcgcacaggccgtggaaagattgcgccatttcgtttcgcgcggagcgctggatatcgag
ggcctgggtgccgaaaacatcgacacattcttcaatgccgggctgatcaagacggccgcc
gatatttttacgcttcgggatcgccgccccgcagtcaccaaggcacttgccgagcggcgc
gaggagcaggccaggcagcgcgaggcggtgtccggcaagacgcgcaagaatgtgcgcagt
gtcgaggaccgcaactatgaaggcctcgacaagctgtttgcggccatcgattcgcgccgc
gagccggaactcgaccgcttcatcttcgcgctcggcatccgccatatcggagagacgacg
gccgccgtgctcgccaagaccttctcgaccatcgaagagctgatccgcgtcggcaaggag
accgcggcggcggcggatccgcacaccgtctttccgtcggtcaacggcattggcgacacg
gtgatcggtgctttgcgcgatttcttcggcaatgagcgcaatgacgacgtgctcgacaag
ctgctcgagcaggtcaagccgaagccgtatgtcgtcaccgtttcggccgacagcgaggtc
gccggcaagaccatcgtcttcaccggcacgctggagaagatgacgcgatcggaagccaag
gcgatggccgagcgtctcggcgccaaggtggccggctcggtttcggccaagaccgacctc
ttggtggcggggccgggtgccggctccaagctcaagcttgccagcgaactcggcgtcgaa
gtcattgacgaggacacctggctgcagcgggtcggcaagtcgtga
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integrated database retrieval system
