Chelativorans sp. BNC1: Meso_1997
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Entry
Meso_1997 CDS
T00374
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mes
Chelativorans sp. BNC1
Pathway
mes03030
DNA replication
mes03410
Base excision repair
mes03420
Nucleotide excision repair
mes03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Meso_1997
03410 Base excision repair
Meso_1997
03420 Nucleotide excision repair
Meso_1997
03430 Mismatch repair
Meso_1997
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mes03032
]
Meso_1997
03400 DNA repair and recombination proteins [BR:
mes03400
]
Meso_1997
Enzymes [BR:
mes01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Meso_1997
DNA replication proteins [BR:
mes03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Meso_1997
DNA repair and recombination proteins [BR:
mes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Meso_1997
NER (nucleotide excision repair)
GGR (global genome repair) factors
Meso_1997
MMR (mismatch excision repair)
DNA ligase
Meso_1997
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Meso_1997
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
ABG63390
UniProt:
Q11GT5
LinkDB
All DBs
Position
complement(2139879..2141990)
Genome browser
AA seq
703 aa
AA seq
DB search
MTTARIPVDELTEEQAKDELARLAQEIGRHDRLYYSEDAPEVSDAEYDALRRRNLAIEQA
FPNLIRADSPSKRIGAPAVEKFEKVRHKVPMLSLDNAFTDDDVVDFVARVRRFLKMEPHA
PIAMTAEPKIDGLSLSIRYENGRLVSAATRGDGQVGENVTANARAVADIPNVLSGDFPEI
LEVRGEVYMTHRDFLALNERQRAEGKQTYVNPRNTAAGSLRQLDASITAARPLKFFAYAW
GEVSEMPSQTQMGMVEALKSYGFRTNKLMCLCETARELLEHYHAIEERRATLGYDIDGVV
YKVNDLALQQRLGYVSRSPRWAIAHKFAAEKAFTILRDIDIQVGRTGALTPVARLEPVTV
GGVVVTNATLHNAEEIERLGIKIGDTVQVQRAGDVIPQILGYAEDRRPADAKEFVFPSVC
PCELKTPVVRDSTAGGGEGVVRRCSGEFACPFQRIEHLRLFVSRRAFDIEGLGEKQIEFF
FRDPDLPVKSPADIFTLAERDAQNIKKLKDKEGWGTVSAGNLFAAIEAKRTIPLDRMIYG
LGIRHVGERTAVTLARGYGSWKAFHDSALAIAGGDLSAREEMDALEDIGDAVIDAIATYF
AEEHNCRLVEALAAQVNVLEAERPVADSPVAGKTIVFTGALERMSRDEAKDMAERLGAKV
AGSVSSKTDLVVAGPGAGSKLKKAAELGIEVIDEDMWFQRIGA
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgaccacagccaggatccccgtcgatgaactgacggaggagcaagccaaggacgaactt
gcccgtcttgcgcaggagatcgggaggcatgaccggctctattactcagaggacgcgccg
gaagtctccgatgccgaatatgacgcgttgcggcggcgcaatctggccatcgagcaggcg
ttcccgaatctgatccgggcggattcgccgtcgaagcgaatcggagcaccggcagtcgag
aaattcgagaaggtccggcacaaggtgccgatgctctcgctggacaacgctttcaccgat
gacgacgtcgtcgacttcgtggcgcgtgtccgccgctttctgaagatggagccccatgcg
ccgatcgccatgacggcggagccgaagatcgatgggctgtccctttcgattcgctatgaa
aacgggaggctcgtctcggctgcaacgcgcggcgacgggcaggtgggcgagaatgtcacc
gccaatgcccgcgccgttgccgatattcctaatgtgctttccggcgattttcccgagatc
ctggaagtgcgcggcgaggtctacatgacccatcgcgattttctggcgctcaacgaacgc
cagcgcgcggagggcaagcagacctatgtgaacccgcgcaacacggcggcaggatcgctc
cgccagctggacgcgtcgatcacggcggcgcgaccgctcaaattcttcgcctatgcatgg
ggcgaggtgagcgagatgccgtctcagacccaaatgggaatggtcgaagcgctgaaaagc
tacggctttcggaccaacaagctgatgtgcctttgcgagactgcgcgagagctgctggag
cactatcatgccatcgaggagcgccgcgccacgctgggctatgatatcgacggcgtcgtt
tacaaggtgaacgatctggcgctgcagcagcggttgggatacgtctcccgcagcccgcgc
tgggccattgcgcataagtttgctgccgagaaggcgttcaccattctgcgcgatatcgac
atccaggtgggccgcaccggtgcgctgacgcctgtggcgcggctggagccagtcacggtg
ggcggcgtggtggtgacaaacgccacgctgcacaatgccgaggagatcgaacgcctcgga
atcaaaatcggcgatacggtccaggtgcagcgtgcgggcgatgtcattccgcagattctc
ggttatgcggaggatcgcagaccagcggatgcgaaagaattcgtcttccccagcgtctgc
ccctgcgagctcaagacgccggtcgtgcgcgattccacggcgggaggcggggagggcgtg
gtgcggcgctgctcgggcgagtttgcctgtcccttccagcgcatcgaacatctgcgtctc
ttcgtctcccggcgcgctttcgatatcgagggattgggcgaaaagcagatcgagttcttc
ttccgcgacccggacctgccggtcaaaagccccgcagacatcttcacacttgccgagcgc
gacgcgcagaacatcaaaaagctcaaggacaaggaagggtggggcacggtctcggccgga
aatctcttcgcggccatcgaagcaaagcggactatcccgctcgaccgcatgatctatggg
ctgggtatccgtcacgtgggtgagcgcaccgccgttacgctggcgcgcggatatggttca
tggaaggccttccacgattcggctcttgcgattgccggcggagatctctccgcacgggaa
gagatggacgcgctggaggatatcggcgatgccgtcatagacgcgatcgccacttatttc
gcagaggagcacaattgccggcttgtggaggcgctcgccgcgcaggtcaacgtgctggag
gcggagcggccggttgccgattcgccggtggcgggcaagacgatcgtctttaccggcgcg
ctcgaacgcatgtcgcgcgacgaggcgaaagacatggccgagcggttgggagccaaggtg
gccggttcggtctcctcaaagacggatctggtcgtggcagggcccggcgctggctccaag
ctcaaaaaggcagccgagctcggcattgaggtcatcgacgaggatatgtggttccagagg
atcggtgcatag
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