Manihot esculenta (cassava): 110615566
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Entry
110615566 CDS
T05761
Name
(RefSeq) transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
KO
K12126
phytochrome-interacting factor 3
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc04075
Plant hormone signal transduction
mesc04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
110615566
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
110615566
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mesc03000
]
110615566
Transcription factors [BR:
mesc03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
110615566
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Motif
Pfam:
HLH
bHLH_SAC51
bHLH_IRO3
Motif
Other DBs
NCBI-GeneID:
110615566
NCBI-ProteinID:
XP_021613189
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All DBs
Position
5:1102164..1106587
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AA seq
525 aa
AA seq
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MADEFAELVWENGQILMRGRSTCPKICTSKKPRLRTENNIPDRGDLFKNKRSVQDDHHSD
DLFPGSYKNDFNIFLGTTRNNTYDEHLTESQIVPECEDENFRLGNDASPVEIPQITKARR
GPLYESSLQRCQASVSISRSIATGSQSLSSMGRLPNSNLQQLNSRTDKDLRLRNFSLFLR
PAMLSKVDDQHQGATEPADGPSSLRVQGLKSNQDKTPADDTALVLESTSGSGNAKDFYKH
QDLVTVKTDQIQQIAKTSEESPQDEQSEAPDHRNAIKSKRFQQRAPISNSSLQANTVEGN
PDREKSKDQLAVATSLCSWGASNDLSYSTLRRNNKDKEAMVSSSETDEGDQQVPKPAFAH
AGAKRKRREVHKQSERKRRDKITKKMRALQALLPNSTKVDKVSVLDNAIEYLKTLQLQLQ
IMSQGTSFCMPPMIVGTGMQPTHIQATNLAHFPTMGLQMDTRIPMGVGCTPAMFSNPAML
GGVLPMPFIPPVSAMPFSGAATPVGFARSAPSLRSNGSIVQNNNS
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgagtttgcggaattggtatgggaaaatggtcagattctgatgcgtggacgg
tctacttgtccaaaaatttgtacttcaaagaaaccaagattgcggactgagaacaatatt
ccagatcgtggggacctcttcaagaataagcgttctgtgcaagatgatcaccattctgat
gacttgtttcccggttcgtacaaaaacgatttcaacatttttctggggacaacccgaaat
aacacgtatgatgagcatctcacagagtcccagatagtacccgaatgcgaagacgaaaat
ttcaggctgggaaatgatgcatctccagttgaaattcctcaaattacaaaagctaggaga
ggtccgttatacgagtcttcgttgcagcgatgccaagcttcagtttcaattagcagatca
attgcgactgggagccaaagcttgtcttcaatgggtagattgcccaactcgaatttgcag
cagcttaattcgagaactgataaagacttaaggttaagaaacttctccctattcttaaga
cctgcaatgctctctaaagtcgatgaccagcaccaaggtgcaacagaacctgcagatggt
ccaagttcattaagagttcagggtttaaaaagcaaccaggataaaactcctgcagatgat
acagcactcgtactggagtcaacaagtggttcaggaaatgctaaagatttctataaacat
caagatctagtcactgttaagacagaccagatacagcagattgctaagacttcggaagag
tcaccccaggatgagcaatctgaagctcctgaccatagaaatgccattaaaagcaagcgg
ttccaacagcgtgcgcctatttcaaactcaagcttacaagcaaatacagtcgagggaaat
cctgatagagagaaatctaaagatcaattggctgtagctacttcactatgctcttgggga
gcttcaaatgatctaagttattctactttgaggaggaataacaaagacaaggaagcgatg
gtgtcttcaagcgaaactgatgagggagatcaacaagtgccgaaacctgcatttgctcat
gcaggtgccaagagaaaacgtcgagaagtccataaacagtctgaaaggaaaagaagagat
aagatcaccaagaagatgcgtgcattacaagctctcttacctaattccaccaaggtggat
aaagtttcagtgcttgacaatgcaattgagtatctgaagacccttcagcttcagctacag
ataatgtcacaaggaaccagcttttgcatgccgccaatgattgtgggaactggaatgcaa
cccacacatatacaggcaacaaatttggctcattttccgaccatgggactacaaatggat
acgagaattccaatgggtgttggttgcaccccagcaatgttctcaaatccagctatgctt
ggtggggtgctacctatgccattcattcctcctgtatctgctatgcctttttctggagcg
gccacgcccgtgggatttgcacgatctgctccttcattaaggtccaatggttcaatagtg
cagaataataactcttga
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