Manihot esculenta (cassava): 110620529
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Entry
110620529 CDS
T05761
Name
(RefSeq) ABC transporter I family member 20 isoform X2
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110620529
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110620529
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110620529
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA_15
Arf
AAA_23
AAA_30
AAA
ORC-CDC6-like
nSTAND3
Zeta_toxin
AAA_7
AAA_25
ATP-synt_ab
TsaE
AAA_28
Motif
Other DBs
NCBI-GeneID:
110620529
NCBI-ProteinID:
XP_021619997
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Position
8:complement(23523165..23531644)
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AA seq
329 aa
AA seq
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MGVVDHQEPTIEINGLRFTYPGIDGHPPPGSKPLIDDFSLTLKSGDRCLLVGSNGAGKTT
ILKILGGKHMVEPQMVRVLGRSAFHDTALTSSGDLCYLGGEWRRDVAFAGFEVPIQMDVS
AEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLRPFKVLLLDEI
TVDLDVLARADLLKFLRKECEERGATIIYATHIFDGLEDWPTHIVYVANGKLQLAMPMAK
VKEISNLSLMRTVESWLRKEKDEERKRRKERKQSGVPEFEKQVEGSRVTGDPAGAAVRVM
NNGWAAGRLHSTIAGEENFFLSSNRVLRQ
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtcgtggatcatcaagaaccaacaatagagataaacggcctgagattcacatat
ccaggaatcgacgggcacccaccgcctgggtcgaagcctctgatagatgatttctctctc
actctcaagtccggtgatcggtgccttctcgttggatcgaatggcgctgggaaaacgaca
atactgaaaatattgggagggaagcacatggtggagcctcaaatggttcgcgtgttgggg
aggtctgcttttcacgacactgctttgacgtcgtctggtgatctctgttatcttggagga
gagtggaggcgagatgttgcttttgctgggtttgaggttcccatacaaatggatgtttct
gcagaaaaaatgatatttggtgtagcaggaattgatcctcagagaagagctgaactgatc
aaggtattagatattgatctgtcatggaggatgcacaaggtttctgatggtcaaagaaga
cgagtgcaaatttgcatgggtctgcttaggccatttaaggttcttcttcttgatgagata
acagttgaccttgatgtgctggcaagggctgaccttctgaagttcctaagaaaggaatgt
gaagaaagaggtgccacgataatttatgcaactcatatatttgatggcttagaggattgg
ccaacacatattgtgtatgtggctaatgggaagttacagttagcaatgccaatggcaaaa
gtcaaggagatcagtaatttatcacttatgaggacagtggagagctggctgaggaaagaa
aaagatgaggagaggaagagaagaaaagaaagaaagcaaagtggggttccagaatttgaa
aaacaagtggaaggaagtcgagttactggtgatccggccggtgctgctgttcgtgttatg
aacaatggttgggctgctggtagacttcactcaaccattgcaggtgaagagaacttcttc
ttaagctcgaatagagttttgagacagtag
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