Manihot esculenta (cassava): 110621032
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Entry
110621032 CDS
T05761
Name
(RefSeq) transcription factor PIF3 isoform X1
KO
K12126
phytochrome-interacting factor 3
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc04075
Plant hormone signal transduction
mesc04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
110621032
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
110621032
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mesc03000
]
110621032
Transcription factors [BR:
mesc03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
110621032
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Gene cluster
GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Svs_4_5_6
Motif
Other DBs
NCBI-GeneID:
110621032
NCBI-ProteinID:
XP_021620739
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Position
8:complement(34653408..34659107)
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AA seq
734 aa
AA seq
DB search
MPLSELVYRLAKGKLDSSQEKNPTCSTDLSSGPENDFVELVWENGQIQSNRTRKIQFSSG
FPSQTSRIQDKDIDNGSNTKVGRFGVMDSVIGEVPMSVPSVVMGLNQDDDMVPWFNYRIE
DTLEHDPELFNELSGVTANEQPHNHYTSMEKRSCGNQSVRDSRSAPGHNGLSSEQGHITK
VSSVGDVDANRPRNGSSQLYPSPSQQCQTSFPCFRSRGSANSGESTNNLSRHATSRDSMR
VPPSGGGLPSIKVQNQVPVSSTTNSSLMNFSHFSRPAAFVKANLHNNGTRAGSGISSIER
KVRKDKGSIANSSNPGECILIDTFSGSGKETSFNYNPVLVSSNVDAKQLDPKSGEESLPS
KQPEALDRVDSKNDKHHCLIAESATRGFVDGEKTAEPLVVSSSVCSGNSVERVSDEPTQN
LKRKHQETEESEVPSEDVEEESVAAKKTTPSRGGGGSKRSRAAEVHNLSERRRRDRINEK
MRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYMPSMMLPPGMPHMQAA
HMAQFSPVGIGMGMGMGMGFGMGMPDMIGGSSGCSMIPVPPMHGACFRGPSISGPSALHG
MGASNLPIFALSAQGHPMSYPCAPLLPISGGPLLKTSIGLNVGGVAGPLDNLDSAPGCFS
KDSIQNISSQAIKNCGANSSMNQTSGQCQMTNENFEQPSLLQHSGQSSEVADRGALNSAN
GNDNAPSGATAGCD
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgcctttatctgagctagtatatcgattggctaaaggaaagcttgattcttctcaggag
aagaatcccacttgctcaactgatctatcttctggacctgagaatgattttgttgagcta
gtatgggaaaatggtcaaattcagtccaacagaactagaaagatccaattctcaagtggt
tttccatctcaaacctccaggatacaggacaaagacatagataatggcagcaacactaaa
gttggaaggtttggggtcatggactctgtcataggtgaagttccaatgtctgtgccgtct
gttgtaatgggtttgaatcaagatgatgacatggtaccttggttcaattatcggattgaa
gacactctggaacatgatcctgagctttttaatgaattatctggtgttactgcaaatgaa
cagccccataatcattatacatcaatggaaaagagaagttgtggtaatcaatcagttaga
gactctcgtagtgctcctggacataatggtttgagttcagagcaagggcacataacaaag
gtttcatcagttggggatgttgatgctaatagacctagaaatggttccagtcagttatat
ccatcaccatcacagcaatgccaaacatcatttccatgttttagatccagaggttcagct
aatagtggtgagagtacaaacaatctgtcccgccatgctacttccagggattcaatgcga
gttccgccttcaggaggtggtttacctagcataaaagtgcaaaaccaagttccagtctca
tctactactaactccagtttgatgaatttctcacatttctcgagacctgctgcatttgtt
aaagctaatcttcacaacaacggtacaagagctggttcaggaatatcaagcattgaaaga
aaggttagaaaggataagggctcaattgcaaatagtagcaatcctggtgaatgcatactc
attgatacatttagtggttcaggaaaggaaacgagcttcaattataacccagtgttggtg
tcatccaatgttgatgctaaacaattggaccctaagtctggtgaggaatcccttccttca
aagcaacctgaggctttggaccgagtagattctaagaatgataaacaccattgcctaatt
gctgaaagtgcaactcgaggatttgtagatggtgaaaagacagcagagccattagttgtt
tcttcttctgtttgctcagggaatagtgtggagagagtttcagatgaaccaacacagaat
ttgaagagaaaacaccaggaaacagaggagtctgaagttccaagtgaggatgttgaagag
gaatcagtagctgcaaaaaaaaccactccttctcgaggaggtggtggctccaagagaagc
cgagcagcagaagtacataatttgtctgaaaggaggcgacgggataggatcaatgagaag
atgcgtgccttgcaagaactcataccaaactgcaacaaggtggacaaagcatcaatgctt
gatgaggcgattgagtatttaaagacactgcagcttcaagtgcagattatgtcaatggga
gctggtctgtatatgccatcaatgatgttgcccccaggaatgcctcacatgcaggctgct
catatggctcaattctcacccgtgggtattggaatgggaatgggaatgggaatgggtttt
ggcatgggtatgcctgatatgattggtggatcttctggttgctctatgattccagtgcct
cctatgcatggagcatgttttcgtggcccatcaatatctggacccagtgctttgcatgga
atgggagcatctaaccttccaatatttgcgctttctgctcaaggacatcctatgtcatat
ccatgtgcacccttactgccaatttctggaggacctcttctaaaaactagcattggactg
aatgttggtggggtggcaggtcccttggataatctggattcagccccaggctgtttctca
aaggattcaattcaaaacatcagctcgcaagcaattaaaaactgtggtgccaatagctcg
atgaatcagacatctggtcagtgccaaatgacaaatgagaattttgaacagccttcttta
ctgcaacatagtggtcaatcctcagaagttgctgataggggagctctgaattcggccaat
gggaatgacaatgcaccgagtggagctactgcaggttgtgactga
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