Manihot esculenta (cassava): 110621412
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Entry
110621412 CDS
T05761
Name
(RefSeq) 5'-3' exoribonuclease 4 isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
110621412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110621412
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
110621412
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
110621412
NCBI-ProteinID:
XP_021621384
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All DBs
Position
8:36840334..36851355
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AA seq
960 aa
AA seq
DB search
MGVPAFYRWLADRYPLAIVDVIEEEPKEDSNGVFNPVDVSKRNPNGVEFDNLYLDMNGII
HPCFHPEGKPAPPTYDDVFKSIFDYIDHLFSLVRPRKLLYMAIDGVAPRAKMNQQRSRRF
RVAKDAAEAEAEEERLRKEFEAEGKLLSPKEKPETSDSNVITPGTQFMAVLSVALQYYIQ
TRLNHNPGWRRVKVILSDANVPGEGEHKIMSYIRLQRNIPGFNPNTRHCLYGLDADLIML
SLATHEIHFSILREMVTLPGQQEKCFLCRQAGHLAAECRGKPGDNALDWNVVDDTPIHKK
KYQFLNIWVLREYLQYELDIPNAPFEINFERIVDDFVFLCFFVGNDFLPHMPTLEIREGS
INLLMHVYRKEFAVMNGYLTDAGEVNLDRVEHFIQSVAVYEEQIFQKRTRIQQAFENNEE
MRLKARKEYSEESQALSVDKVKLGEPGYKERYYAEKFGLSNPDEIEELRKDVVLKYVEGL
CWVCRYYYQGVCSWQWFYPYHYAPFASDLKDLADLEITFFLGEPFKPFDQLMGTLPAASS
NALPEEYRKLMTDASSPIHKFFPPDFEIDMNGKRFAWQGIAKLPFIDERKLLAQTKKLES
TLTEEERVRNSVMLDLLYVCHAHPMAAQIISYCEVAISLPPYRRVCCSIDTNASAGMNGY
LWLTERNVWKSTVISPVNGLPDIKHNQVLNITYLNPINHRHVPEPPIGVVMPEKILKPID
IKPFPTLWHEDNGRRQQGRERPQVPRGIAGTLLGEAAHRLVKNTLNIRPNGSSSRYFEQT
PYRNISGNPTVNRPRPAGPSGHERGYNEDPNYYYGHYNNQQATSNPGFPPISNGMPANRH
NFKTQDRVQYPEQYHDIRTGVSALTVEENVRTRPPVVMLQRMPNTGNNSNMRHQVEQNIG
PLPSPPTNWILKAAGDTEMYFRQERGAVEKQMKQVYQVKSRAAQETSNPVAQEIADLNLQ
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtgcccgcgttttacaggtggcttgcagaccgttacccactggcaattgtagat
gtaattgaagaagaacctaaagaggacagcaatggcgtcttcaaccctgtcgacgtttca
aaacgtaaccctaacggcgtggagtttgataacttgtacttggatatgaatggtataatt
catccttgtttccatccagaagggaagcctgcacctcctacttatgatgatgttttcaaa
tcaatatttgactacattgaccatcttttctcattggttcgaccaaggaagcttctatat
atggcaattgatggggttgctcctagagctaaaatgaatcagcaacgatctcgacgcttt
agagttgcaaaagatgctgctgaagctgaagctgaggaagaaagattgagaaaagaattt
gaggctgaggggaagctcttgtctcctaaagaaaagcctgaaacatccgactctaatgtc
atcactcctgggacccaatttatggctgtgctttcagttgcacttcaatactatatccag
acgaggctgaatcacaacccgggctggcggcgtgtaaaggttatcctttctgatgcaaat
gtccctggtgagggagagcacaaaatcatgtcatacataaggttacaacgtaacattcct
ggtttcaatccaaacacacggcattgtctatatggtctggatgctgacttgattatgctg
tcattagcgacgcatgaaattcacttctcaatattgagagagatggttacacttcccggg
caacaggaaaagtgttttctctgtcgtcaggctggccatcttgcagctgagtgtcgtggg
aagccaggagataatgcgctagattggaatgtggtagatgatactccaattcacaagaag
aaatatcagttcctcaacatctgggtgttgcgagaatatttgcagtatgaattggatatt
ccgaacgctccatttgaaatcaactttgaacgaatcgtggatgattttgtatttctatgt
ttctttgttggcaatgactttcttccacatatgccaacattggaaattagggagggttct
ataaatttattgatgcatgtgtacagaaaggagtttgctgtgatgaatggttatcttact
gatgcgggtgaggtgaatcttgacagagtagaacactttatccagtcggtagcggtttat
gaagagcagatctttcagaaaaggactcgtatacaacaggctttcgagaataatgaagag
atgagactcaaagcaagaaaagagtactctgaagagtcacaggcactgtctgtagacaag
gttaaactgggggagcctggttacaaagaaagatattatgctgaaaaatttggtttatct
aatcccgatgaaattgaggaattgagaaaagatgtagttctgaagtatgtggaaggttta
tgttgggtctgccggtattactaccaaggtgtttgctcttggcaatggttttatccatac
cattatgctccatttgcctctgatctcaaggatcttgcagacttggaaataacctttttt
ttgggggagccattcaaaccctttgatcagctaatgggaaccctacctgctgcaagctct
aatgcgttgcctgaagaatacaggaaattgatgactgacgcatcatcaccaatacataaa
ttctttcccccagattttgagattgacatgaatggtaaacgctttgcctggcagggtata
gccaaattgccattcattgatgagaggaaattgcttgctcaaacaaagaaacttgaaagc
actttaacggaggaagaacgggtgcgaaatagtgtaatgctagatttgctgtatgtttgt
catgctcatcctatggctgcacaaatcatctcatattgtgaagttgccatttcattacct
ccatacagaagagtttgttgttcaatagacacaaatgctagtgctgggatgaatggctat
ctttggttaactgagaggaatgtctggaaaagtacagtcatttcccctgtcaatgggttg
ccggacataaagcacaaccaagtcttaaatattacgtatcttaatcctataaatcataga
cacgtccctgaacctccaattggtgtggtcatgcctgagaagattttaaaacctattgat
attaaaccattccccacactatggcatgaagataatggtcggcgccagcaaggcagagaa
aggccacaagtacctagagggatagcgggcactttattgggtgaagctgctcaccgactt
gtcaagaacacgcttaatatcagaccaaatgggtcatcttctagatattttgagcaaact
ccatatcgtaatatctcaggtaatcctacggtcaatagacccaggccagctggaccctct
ggtcatgaaaggggctacaatgaggacccaaactactattatgggcactacaataatcag
caagccaccagtaatcccggatttcctccaatatcaaatggcatgccagccaatcggcac
aactttaagactcaggacagagtacaataccctgagcagtaccatgacataagaactggg
gtatctgctttgactgtagaagaaaatgtcagaaccagaccacctgtagtaatgctgcag
cgcatgccaaatacagggaataattcaaatatgcgtcaccaggttgagcagaacataggt
ccacttccttcaccgcctaccaattggattctcaaggcagcaggagataccgagatgtat
tttagacaagaaaggggtgcagttgagaagcagatgaagcaggtttatcaggtcaagagt
cgggcagctcaggaaacatcaaatcctgttgctcaagaaatagccgacttgaatctgcaa
taa
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