Manihot esculenta (cassava): 110622868
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Entry
110622868 CDS
T05761
Name
(RefSeq) transcription factor PIF3 isoform X1
KO
K12126
phytochrome-interacting factor 3
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc04075
Plant hormone signal transduction
mesc04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
110622868
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
110622868
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mesc03000
]
110622868
Transcription factors [BR:
mesc03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
110622868
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
110622868
NCBI-ProteinID:
XP_021623245
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Position
9:37011068..37015985
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AA seq
735 aa
AA seq
DB search
MPLSELVYRLAKGKLDSSQEKNPTCSTDLSSEPETDFVELVWENGQIQSSKTRKIQFSSS
FPSQTSKIRDKDVANGSNTKMGRFGAMDSVIGEVPMSVPSVEMGLNQDDDMVPWLNYPIE
DSLQHDYCSEFLAELSGVTVNENSQTNYASMEKRNCGNQSVRDPCPASVRNSLSLEQGHI
SRVSSTGDVDASRPRTSSSQLYPSPSQQCQTSFPYFRSRVSAGNSESMSNLARHAASGDS
IGVPPSGGGVPSAKMQKQVPVSSATNPSLMNFSHFSRPAALVKANLCNMGTKAGSGISNM
EKMVSKDKGSIASRSNPAESILADTFSGLRKDISSNCHPAMVLPKVDAKSLDPTPAEESL
PAKRPEALDQEDCKSDKNHCQLAESTTRGLVDGEKTAEHLVASSSVCSGNSVERVSDERT
QDLKRKHRETEDSEGPSEDVEEESVGAKKAAPARGGPGSKRSRAAEVHNLSERRRRDRIN
EKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYMPSMMLPPGMPHMH
AGHMVQFSPMGVGMGMGMGMGYGMGMPDMIGGSSGCSMIQAPPMHGAHFPGPPMSGPSAL
HGMGGSNLPIFGLSAQGHPMPYPCAPLMPVSGGPLLKTTMGLNAGGLAGPVDNLNSGPGS
RSKDAIQNISQAMQNSGANSSMNQTSTQCQVTNERFEQHPSVQNSGQASEVTDRGAVKSA
NGNDNTPNQVTAGCD
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgcctttatctgagctagtgtaccgtttggctaaaggaaagcttgattcttctcaggag
aagaatcccacatgctcaactgatctatcttctgaacctgagactgattttgttgagtta
gtatgggaaaatggtcaaattcaatccagtaagacaagaaagatccaattctcgagtagt
tttccatctcaaacctccaagattagagataaagacgtagctaatggcagcaacactaaa
atgggaaggtttggggcaatggactctgtaataggtgaagttccaatgtctgtgccgtca
gttgaaatgggtttgaatcaagacgatgacatggtaccttggttgaattatccaattgaa
gactctctacaacatgattattgttctgagtttctggcagaattatctggtgttactgta
aatgaaaattcccagactaattatgcctcaatggaaaagagaaattgtggcaatcaatca
gttagagatccctgtcctgcttctgtacgtaatagtttgagtttagagcaagggcatata
tcaagggtttcttcaacaggggatgttgatgctagtagacctagaactagttccagtcag
ttatatccatcaccatcacagcaatgccaaacatcatttccttattttagatccagagtt
tcagctggtaatagtgagagtatgagcaatctggctcgccatgctgcttctggggattca
ataggagttccaccttcaggaggtggtgttcctagtgcgaaaatgcaaaaacaagttcct
gtgtcatctgctactaatcccagtttgatgaatttctcacatttctcaagacctgctgct
ctggtaaaagctaatctttgtaacatgggcacaaaagctggttcaggaatatcaaacatg
gaaaaaatggttagtaaggataagggctcaattgcaagccgtagcaatcctgctgaatcc
atactcgctgacacatttagtggtttacgaaaggacataagctccaattgccatcctgct
atggtgttaccaaaggttgatgctaaatcattggaccctacgcctgctgaggaatccctt
cctgcaaagcgacctgaggccttggaccaagaggattgtaagagtgataaaaaccattgc
caacttgctgaaagtacaaccagaggattggtggacggtgaaaagaccgcagagcatcta
gttgcttcttcttctgtttgctcagggaatagtgttgagagagtttcagatgaacgaaca
caggatttgaagcggaaacaccgggaaacagaggattctgaaggtcctagtgaagatgtt
gaagaggaatctgtaggtgctaaaaaagctgctcctgctcgaggaggtcctggttccaag
agaagccgagcagcagaagtacataatttgtctgaaaggaggcgacgggataggatcaat
gagaagatgcgcgccctgcaggaactcataccaaactgcaacaaggtggacaaagcttca
atgcttgatgaggccattgagtatttaaagacccttcaacttcaagtacagattatgtca
atgggagctggtttatatatgccatcaatgatgttgcccccaggaatgcctcacatgcat
gctggtcatatggttcaattctctcccatgggtgttggaatgggaatgggaatgggaatg
ggttatgggatgggtatgcctgatatgattggtggatcctctggttgctctatgattcag
gcgcctccaatgcatggagcacattttcctggcccgccaatgtcggggcccagtgctttg
catgggatgggaggatctaaccttccaatatttgggctttcagctcaaggacatccaatg
ccatacccatgtgcacccttaatgccagtgtctggaggacctcttttaaaaactaccatg
ggactgaatgctggcggattggcaggtccagtggataatttgaattctggcccaggctcc
cgttcaaaggatgcaattcaaaacatttcacaagctatgcaaaacagtggtgccaatagc
tcaatgaatcagacatctactcagtgccaagtgacaaatgaacggtttgaacagcatcct
tcagtgcaaaatagtggtcaagcctcagaagtcactgacaggggagctgtgaagtcagcc
aatgggaatgacaatacgccaaatcaagtcaccgcaggttgcgactga
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