Manihot esculenta (cassava): 110627318
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Entry
110627318 CDS
T05761
Name
(RefSeq) DNA repair protein RAD16 isoform X1
KO
K15083
DNA repair protein RAD16
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mesc03400
]
110627318
DNA repair and recombination proteins [BR:
mesc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
110627318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
zf-RING_5
DEAD
zf-C3HC4_3
zf-RING_2
zf-C3HC4_4
zf-C2HC_2
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
110627318
NCBI-ProteinID:
XP_021629275
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Position
12:complement(8024843..8038309)
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AA seq
920 aa
AA seq
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MELRPRKRISKPSIDDAEQGEHDFFREADGGSPSHGCGSDVELYVLSSHSDDSNSDDECE
MVEEVSGKKQKANTKISIDIDDQEDNFLVSMSTRDLDISDYPEPSAEISIGSNSEQLPRA
AQVKYVAEKGKRAYRSRRKRDKNRSEPPLMWEIWEEEYDKWIDEHLTDYVDLDHQHGIVN
EAVEPPQDLIMPLLRYQKEWLAWSLKQEESETKGGILADEMGMGKTIQAISLVLAKREIL
QKNQESFGATTLPGSSIDIAGTKPTLVVCPVVAVSQWVSEIDRFTAKGSTKVLVYHGANR
EKSSKKFSDYDFVITTYSTVEAEFRKYMMPPKEKCPYCGKSFHENKLFIHQKYYCGPDAI
RTAKQSKQDRKKLKNGSLASMQKKESGEVKSHEFQDNVMKGARKKKRKQHGVEDDIEAME
NLDVEQALRKEKSLLHSVKWDRIILDEAHYVKDRRCNTAKAIFALESSYKWALSGTPLQN
RVGELYSLVRFLQIVPYSYYLCKDCDCRTLDYRSSAQCLSCPHSSVRHFCWWNKYISNPI
QANGTIDIGKRAMVLLTQKVLRNIVLRRTKKGRAADLALPPRMVMLRRDTLDVKEEDYYQ
SLYNESQAQFNTYVTAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTAAQKEGNLVYAH
NSEQGCGICHEPVEDPVVTACLHVFCKACLLDFSASLGQVSCPTCSKLLTVDLTANAGCG
DQTAKTTIKGFKSSSILNRIQLNDFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFL
DLISYSLHKSGVNCVQLVGSMTLAARDAAIKKFTEDPDCKIFLMSLKAGGVALNLTVASH
VFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFIIENTIEERILQLQEKKELVFEGTVG
GSSDALGKLTEADLRFLFIT
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atggagctccgtcctcgtaaaagaatctccaaaccctccatcgatgacgctgagcaaggg
gaacatgatttctttagagaagctgacggtggtagcccatcacatggctgtggctctgat
gtggaattatacgtcctgtcttcacattctgatgatagcaactccgatgatgaatgtgaa
atggttgaagaggtttcgggcaaaaagcaaaaagcaaatactaaaatcagcattgacatt
gatgatcaggaagataattttctagtttctatgagtactagggatcttgacatttctgat
tatccagagccttctgctgaaataagtatcgggtctaatagtgaacagctgccaagagca
gctcaagttaaatatgttgcagagaaagggaagagagcttataggtcaagaaggaagcgg
gataaaaataggtctgagccaccattgatgtgggaaatttgggaagaagagtatgataaa
tggattgatgaacacttgacggattatgttgatttggaccatcaacatggtattgtgaat
gaagcggttgaaccaccacaggatttgattatgcctttgttaagataccaaaaggaatgg
ttggcctggtctctaaagcaggaagagtcagagaccaaggggggaattcttgctgatgag
atgggaatgggtaagaccattcaagcgatttccttggtccttgccaaacgagaaattttg
cagaaaaaccaggaatcctttggagccacaacgttaccaggttcatccattgatattgct
ggaaccaaacccacccttgtagtctgtcctgtggtagcagtgagtcagtgggtaagtgag
attgatcgatttactgcaaaaggaagcaccaaggtactggtttatcatggagccaataga
gagaagagttctaaaaagttctctgattatgattttgttataacaacctatagtactgtt
gaggctgaattcagaaaatacatgatgccgcctaaggagaagtgtccttactgtgggaag
tcattccatgaaaacaaactcttcattcaccagaagtattattgtggccctgatgccatt
agaactgcaaagcagtctaagcaagataggaagaagctcaaaaatggatcactagcttct
atgcagaaaaaagaatctggtgaagtcaaaagtcatgaatttcaggataatgtaatgaag
ggagctcgaaagaagaaaaggaaacagcatggtgtggaagatgatattgaggctatggag
aatttggatgttgaacaggccttgcgcaaagagaagtcacttctgcactcagtgaagtgg
gatcgcattattttggatgaggctcattatgtgaaagataggcgttgtaatactgcaaaa
gctatttttgctttagaatcttcatataaatgggctttaagtggcactccccttcaaaat
cgtgttggagaactttattctttggtacgattcttgcaaatagtcccatactcttattac
ttgtgcaaggattgtgattgccgaacccttgattataggtcatcagcacaatgcttaagc
tgcccccacagttctgtgagacatttttgttggtggaataaatacatttctaatccaata
caagcaaatggaactattgacattggaaaaagagctatggtattgctcacacaaaaagtt
ttgagaaacatagtgcttagacgcaccaaaaagggtagagctgctgaccttgctcttcct
cctaggatggttatgttgaggcgtgatactctggatgttaaggaagaagattattatcag
tcattatataatgaaagccaggcacaatttaatacatatgtcacggctggaactgtaatg
aataactatgcacacatatttgacctcctcactcgtttgcggcaggcagttgatcatccc
taccttgtagtatattctaaaactgcagcacaaaaagaaggaaacttggtttatgctcat
aatagtgagcaaggttgtggcatttgccatgaaccagttgaagatcctgtggttactgcc
tgtctccatgtcttctgtaaggcttgtctgcttgatttctctgcttccttgggacaagtc
tcctgccctacctgttctaagttacttactgttgatttgactgcaaatgctggttgtgga
gatcagactgctaagacaaccattaagggatttaaatcctccagtattctcaacagaata
caattaaatgattttcagacaagcacaaagatagaagctttgagggaagaaattagattt
atggttgaaagggatggttctgcgaaaggaattgttttcagccagttcacttcattcttg
gatctcataagctactcattacataagtctggtgtaaattgcgttcaattggtgggaagc
atgactttggctgcaagagatgctgctatcaagaaattcactgaggatccagattgcaaa
atattcttgatgagtttgaaagctggaggagtggctctcaatctgacagtagcatcacat
gttttcttgatggatccttggtggaacccagctgtggagcggcaggcacaagatagaatt
catcgtattgggcaatacaaaccaatcagaattgtgagatttattattgagaacactatt
gaggagaggattttgcagctgcaagagaaaaaggaattagtgtttgaagggactgttggc
ggctcttcagatgccctgggaaaattaacagaggcagatctgcggtttttattcatcact
tga
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