Mesorhizobium sp. ANAO-SY3R2: ABSY17_10275
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Entry
ABSY17_10275 CDS
T10784
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mess Mesorhizobium sp. ANAO-SY3R2
Pathway
mess03030
DNA replication
mess03410
Base excision repair
mess03420
Nucleotide excision repair
mess03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mess00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABSY17_10275 (ligA)
03410 Base excision repair
ABSY17_10275 (ligA)
03420 Nucleotide excision repair
ABSY17_10275 (ligA)
03430 Mismatch repair
ABSY17_10275 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mess03032
]
ABSY17_10275 (ligA)
03400 DNA repair and recombination proteins [BR:
mess03400
]
ABSY17_10275 (ligA)
Enzymes [BR:
mess01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABSY17_10275 (ligA)
DNA replication proteins [BR:
mess03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABSY17_10275 (ligA)
DNA repair and recombination proteins [BR:
mess03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABSY17_10275 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABSY17_10275 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABSY17_10275 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABSY17_10275 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
HHH_3
Nlig-Ia
DZR_2
Motif
Other DBs
NCBI-ProteinID:
XHM77852
LinkDB
All DBs
Position
1154985..1157141
Genome browser
AA seq
718 aa
AA seq
DB search
MSEKSVESLSEAEAAAELARLAEELAEHDRRYYAEDAPTITDAAYDAMRRRNLAIEQRFP
HLIREDSPSKRVGAEVSAKFGKITHAVPMLSLDNAFADDDVVEFVGRIRRFLRLGADTPI
AITAEPKIDGLSLSLRYERGRLVSAATRGDGQVGENVTPNARTVADIPNVLSGDFPDVLE
VRGEVYMSHADFAEINRRNAEAGKPLFANPRNAAAGSLRQLDASITASRPLRFFAYAWGE
ISEMPADTQMGMVAAFRSYGFRTNPLMKLFDSVEGLLSQYHLIEADRASLGYDIDGVVYK
VDRLDLQQRLGFISRSPRWAIAHKFPAEKATTILTGIDIQVGRTGALTPVARLEPVTVGG
VVVTNATLHNEDYIKGIGNSGQAIRDEEHDIRIGDTVIVQRAGDVIPQILDVVMEKRPAD
ATPYVFPIRCPACDSHAVREEGEVVRRCTGGLICPAQAVERLRHFVSRNAFDIDGLGEKQ
IEFFFHAEDPALRVRSPADIFTLRRRQEGSLTKLENIEGFGVTSARKLFAAIDDRRQVEL
SRFLFALGIRHIGETNAKRLARHYISFDAFRKAGSEAVIPEGKGDKGNAAWQELTAVSGI
GAIVAEAVVEFFAEEHNRQVVDALLAEVTPLDEERIGDVSSPVSGKTVVFTGSLEKMSRD
EAKAMAEKLGAKVAGSVSKKTDLVVAGPGAGSKLKTATELGIEVISEDQWFERVNQAG
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagaaatcagtcgaatcgctgagcgaggcggaagccgcggccgaacttgcgcgg
ctggctgaggaactcgccgagcatgaccggcgctactatgctgaagacgcgccgacgatc
acagatgctgcatatgatgccatgcgccggcgcaacctcgccatcgagcagcgcttcccg
catctcatccgcgaggattcgccatccaagcgggtaggggccgaggtttccgcgaagttc
ggcaagatcacccatgcggtgccgatgctgtcgctcgacaacgcctttgccgacgacgat
gtggtcgaattcgtcggccgcatcaggcgcttccttaggctgggggcggacacgccgatc
gccatcaccgcggaacctaagatcgacgggctgtcgctgtcgctgcgttacgagcgtggt
cggctggtatcggcggccacgcgcggcgacgggcaggtaggcgaaaacgtcacccccaat
gcgcgcaccgtggccgatatcccgaacgtgctgtcgggcgacttccccgacgtgctcgaa
gtgcgtggcgaggtctatatgagccatgccgacttcgccgagatcaatcgccgcaacgcc
gaggcgggcaagccgctcttcgccaatccgcgcaacgcggcagccggttccctgcgccag
ctcgacgcatcgatcaccgccagccggccgctgcgcttcttcgcctatgcctggggcgag
atcagtgaaatgcccgccgatacgcagatgggcatggtcgccgccttcagaagctacggc
ttcaggaccaatccgctgatgaagcttttcgacagcgtggaagggcttttgtcgcagtat
catctcatcgaggctgatcgcgcgtcgctgggttatgacatcgacggcgtcgtctacaag
gtcgaccggctcgacctgcagcagcgtctcggcttcatctcgcgcagcccgcgctgggcc
atcgcccacaaattcccggccgagaaggcgacgaccatcctcaccggcatcgacattcag
gtcggccgtaccggcgcgctgacgccagtggcgcggcttgagcctgtaacggtgggcggc
gtggtggtcaccaatgccacgctgcacaacgaggactacatcaagggcatcggcaacagc
ggccaggcgatccgcgacgaggagcacgacatccgcatcggcgacacggtgatcgtgcag
cgcgccggcgatgtcatcccgcaaatcctcgacgtcgtcatggaaaagcgcccggcggat
gcgacgccctacgtcttcccgatccgctgcccggcctgcgacagtcatgccgtgcgtgag
gagggcgaggtggtgcgccgttgcaccggcggcctgatctgcccggcgcaggcggtcgaa
cggcttcgccatttcgtctcgcgcaatgccttcgacatcgacggcttgggcgaaaagcag
atcgagttcttcttccacgccgaggatccggcgctgcgcgtgcgttcgcctgctgacatt
ttcacgctcaggcgccgtcaggagggctcgctcaccaagctggagaacatcgaaggcttc
ggtgtgacttcagcgcgcaagctgtttgcggctattgacgatcgccgccaggtggaactc
tcccgcttcctgttcgcgctcggaatccgccacatcggcgagaccaacgccaagcggctg
gcgcgccactacatcagctttgatgccttcaggaaggcgggcagcgaagctgtcatcccc
gaaggcaagggcgacaagggtaacgccgcttggcaggaactgaccgcagtgagcggtatc
ggtgcgatcgtagcggaggccgtggtcgagttcttcgccgaggagcacaacaggcaggtg
gtcgacgcgctcctggccgaggtgacgccgctggacgaagaacgcatcggcgacgtctcg
tcacccgtgtccggcaagacggtggtcttcaccggctcgctcgagaagatgtcgcgcgac
gaggccaaggcgatggccgagaaactaggcgccaaggtcgcgggctcggtgtcgaagaag
accgatctggtggtggcaggccccggcgctggctcgaagctcaagaccgcaaccgagctg
ggtatcgaggtcatctccgaagaccagtggttcgagcgggtcaatcaggcgggctga
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