Mesorhizobium sp. AR10: LHFGNBLO_003145
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Entry
LHFGNBLO_003145 CDS
T10612
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mesu Mesorhizobium sp. AR10
Pathway
mesu03030
DNA replication
mesu03410
Base excision repair
mesu03420
Nucleotide excision repair
mesu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mesu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LHFGNBLO_003145 (ligA)
03410 Base excision repair
LHFGNBLO_003145 (ligA)
03420 Nucleotide excision repair
LHFGNBLO_003145 (ligA)
03430 Mismatch repair
LHFGNBLO_003145 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mesu03032
]
LHFGNBLO_003145 (ligA)
03400 DNA repair and recombination proteins [BR:
mesu03400
]
LHFGNBLO_003145 (ligA)
Enzymes [BR:
mesu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LHFGNBLO_003145 (ligA)
DNA replication proteins [BR:
mesu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LHFGNBLO_003145 (ligA)
DNA repair and recombination proteins [BR:
mesu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LHFGNBLO_003145 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LHFGNBLO_003145 (ligA)
MMR (mismatch excision repair)
DNA ligase
LHFGNBLO_003145 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LHFGNBLO_003145 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
DUF4796_N
Zn_ribbon_PaaD
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
UVK36246
LinkDB
All DBs
Position
3291256..3293460
Genome browser
AA seq
734 aa
AA seq
DB search
MSEKPVDALTESEAAAELKRLAKEIAGHDLRYHAEDAPTISDAEYDALKRRNLAIEQHFP
ALEREDSPSHRVGAPPAEGFAKVRHAVPMLSLAKAYTDQDVTDFIERGRRFFDRDKDLDI
AFTAEPKIDGLSASLRYEGGVFVQGATRGDGAVGEDITANLRTIADIPAKLKGSGWPEVI
EIRGEVYMTYAEFEALKERSAAAGGQDYVNPRNTAAGSLRQKDASVTASRNLRFFAYAWG
YTSEDPAPTQYASVQKFAEWGFKISPLMVRAKSVEELVAHYHLIEEQRSSLGYDIDGVVY
KVDQLELQRRWGFVTGEPRWAVAHKFPAEQAMTTVQKIDIQVGRTGTLAPVARLAPVTVG
GVVVENVTLHNEDYIKGLDSTGQPIRDGIDVRIGDTVVIQRAGDVIPQIVSVVIDKRPPD
AAPYEFPHTCPICGSPATREINEKTGKEDSRRRCTGELICPAQAVEGLRHFVSRGAMDIE
GLGAENIDIFFNSGLIKTAADIFTLRDRRPAVTKALAERREEQARQREAASGKTRKNVRS
VEERNYEGLDKLFAAIDSRREPELDRFIFALGIRHIGETTAAVLARTFSTIEELIRVGKE
TAAADDPHTVFPSVNGIGDTVIDALRDFFGNERNDDVIEALLTQVKPKPYIVTISADSAV
AGKTIVFTGTLEKMTRPEAKAMAERLGAKVAGSVSAKTDLVVAGPGAGSKLKLASELGIE
VIDEDAWLVRIGKA
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaaaaaccagtcgatgccctgaccgagagcgaagccgcggccgagctgaagcga
ttggcaaaggaaatcgccggtcacgatctgcgctatcacgcagaggatgcgccaacgatc
tcggatgccgaatatgatgcgctgaagcgacgcaatctcgccatcgagcagcacttcccc
gcactcgagcgcgaggattcgccatcgcacagggtgggcgctccaccggcggaaggcttt
gccaaggtgcgtcatgcagtgcctatgctcagcctcgccaaggcctataccgaccaggac
gtcacggatttcatcgaacgtggccggcgattttttgatcgcgacaaggacctcgacatc
gccttcacggctgagccgaagatcgacgggctgtcggcttcgctgcgctatgaaggcggc
gtgttcgttcagggcgcaacgcgcggcgatggcgccgtcggcgaggacatcaccgccaac
ctccgtacaatcgccgacatccccgcgaagctgaaaggctcgggctggccggaagtcatc
gagatccgcggcgaggtctatatgacctatgcggaattcgaggcgctgaaggaacgttct
gcggcggccggcggtcaggactacgtcaatccgcgcaatacggcggccgggtcgctgcgc
cagaaggatgcatccgttaccgccagccgcaaccttagattctttgcctatgcctggggc
tatacatcagaggatcccgctccgacccaatacgcttccgtgcaaaaattcgcagagtgg
gggttcaagatcagtccgctgatggtgcgggcaaagtcggtcgaggaactggtcgcgcat
tatcatctgatcgaggagcagcgctcttcgctgggctacgatatcgacggcgtcgtctac
aaggtcgatcagttggaattgcagcgcagatggggtttcgtcaccggcgaaccacgctgg
gccgtcgcccataaattcccggccgaacaggcgatgacgaccgtgcagaaaatcgacatc
caggtcggccgcaccggcacgctggcgcccgttgcacggcttgcgcccgtcacggttggc
ggcgtcgtggtggaaaatgtgacgctgcacaacgaggactacatcaagggcctggacagc
acaggccaaccgatccgcgacggcattgatgtgcgcatcggcgacacggtcgtgatccaa
cgggcaggggacgtcatcccgcagatcgtcagcgtcgtcatcgacaagcgtccgcccgat
gccgccccttacgaattcccgcacacctgcccgatctgcggctcgccggcgacgcgcgaa
atcaacgagaaaaccggcaaggaagactcccgccgtcgctgcaccggcgaactgatctgc
cccgcgcaggcggtggaaggattgcgccactttgtgtcacgcggtgccatggacatcgaa
ggcctgggcgccgagaacatagatatcttcttcaattcgggattgatcaaaacagccgcc
gatatcttcacgctcagggatcgccgtcccgccgtcaccaaggcgctggccgagcggcgc
gaggagcaggccaggcagcgtgaggccgcatcgggcaagacgcgcaagaatgtacgcagt
gtcgaggaacgcaactacgaaggcctcgacaagctcttcgctgccatcgattctcgccgt
gaacccgagctcgatcgcttcatctttgcgctgggcatccgccatatcggcgaaacgacg
gccgccgtgcttgcccggacgttctcgaccattgaagagttgatccgcgtcggcaaggag
acagcggcggcggacgatccgcacaccgttttcccatcggtcaacggcattggcgacacg
gtgattgatgcacttcgcgatttcttcggcaatgaacgcaacgacgacgtgattgaagcg
ctgctcacgcaggtcaagccgaaaccatacattgtgaccatctcggccgacagcgcagtc
gcgggcaagacaatcgtgttcacgggcacgctggaaaagatgacgcgcccagaagcgaag
gcaatggctgagcgtctcggcgcgaaggtcgcgggatcggtttctgcaaagacggatctc
gtcgttgccggacctggtgcggggtccaaactcaagctcgccagcgagctcggcattgag
gtgatcgacgaggatgcctggctggtgcggatcggcaaggcatga
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