Methyloversatilis sp. RAC08: BSY238_191
Help
Entry
BSY238_191 CDS
T04449
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
metr
Methyloversatilis sp. RAC08
Pathway
metr03030
DNA replication
metr03410
Base excision repair
metr03420
Nucleotide excision repair
metr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
metr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BSY238_191 (ligA)
03410 Base excision repair
BSY238_191 (ligA)
03420 Nucleotide excision repair
BSY238_191 (ligA)
03430 Mismatch repair
BSY238_191 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
metr03032
]
BSY238_191 (ligA)
03400 DNA repair and recombination proteins [BR:
metr03400
]
BSY238_191 (ligA)
Enzymes [BR:
metr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BSY238_191 (ligA)
DNA replication proteins [BR:
metr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BSY238_191 (ligA)
DNA repair and recombination proteins [BR:
metr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BSY238_191 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BSY238_191 (ligA)
MMR (mismatch excision repair)
DNA ligase
BSY238_191 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BSY238_191 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AOF80363
LinkDB
All DBs
Position
complement(195135..197222)
Genome browser
AA seq
695 aa
AA seq
DB search
MPSVESATERAAALRAQIARHDRLYYELDAPEIPDAEYDRLFRELQALEAEHPALRTPDS
PTQRVGGKPLPAFAPVRHVVPMLSIRTETDTESTGALNFDARVRRELKLDDTQPPVEYAA
ELKFDGLAINLRYERGVLVLAATRGDGETGEDVTQNVRTIHEVPLTLVPQLPSPPPSQRP
SLFDAPGLPEVLEVRGEVYMRRDRFDAFNLRADAAGEKTLVNPRNAAAGSIRQLDPAIAA
RRPLSFFAYGLGEVQGWTVPATHAGVLDALAAFGLPVCEHRAVCSGAEALAAFHARIAEA
RPGLPFDIDGVVYKVNSLALQQKLGFVTREPRWAVAHKYPAQEALTTVQDIEVQVGRTGK
LTPVARLAPVFVGGVTVTNATLHNESEIRRKDVHVGDTVVVRRAGDVIPEVVSVLSDRRP
PHARAFSMPMNCPVCGSDVVREEGEIDHRCTGGLYCAAQRKQALLHFAGRRAMDVEGLGD
KLVEQLVDGGLIRSLPDLYRLGVLKLAELDRMADKSAENLVAALEKSKTTTLGRFLFALG
IRHVGEATAKDLARHLGSMDRIMDASEAELAQVPDVGPVVAASIHRFFAQPHNREVVEQL
RACGIVWEEGEMQVASGPLVGKTVVLTGTLPTLSRDEAKDMLEAAGAKVAGSVSKKTDFV
VAGTDAGSKLTKAQELGITILDESGLLSLLGNRES
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgccgtctgtcgaatcggccaccgagcgcgccgccgcgctgcgcgcgcagatcgcccgg
cacgaccgcctgtattacgagctggatgcaccggagattcccgacgccgagtacgaccgg
ctgttccgtgaattgcaggcgctggaagccgaacacccggcgttgcgcacgcccgattca
ccgacgcagcgcgtcggcggcaagccgctgccggccttcgcaccggtgcgccatgtcgtg
ccgatgctgtccatccgcaccgaaaccgacaccgaatcgaccggcgcgctgaatttcgac
gcgcgcgtgcggcgcgaactgaagctggacgacacgcagccgccggtcgagtacgcagcc
gaactgaaattcgatggtctggcgatcaatctgcgctacgagcgcggcgtgctggtgctg
gccgccacgcgcggcgacggtgaaaccggtgaggacgtgacgcagaacgtacgcaccatt
cacgaggtaccgctgaccctggtgccgcagttgccctcacctccgccttcacagcggcct
tcgctgttcgacgcgcccggcttgcccgaggtgcttgaagtgcgcggcgaggtctacatg
cggcgcgaccgattcgatgccttcaacctgcgcgccgacgcggcgggcgagaagacgctg
gtcaatccgcgcaatgccgcagcgggcagcatccgtcagctcgacccggccatcgcggcg
cggcgaccgctgtcgttcttcgcctatggcctcggcgaggtgcagggctggacggtgccg
gccacccatgccggcgtgctcgacgcgctcgccgccttcggcctgccggtgtgcgaacac
cgcgcggtctgcagcggcgccgaggcgctggccgcctttcacgcgcgcatcgccgaggcg
cgaccgggtctgccgttcgacatcgacggtgttgtatacaaggtgaacagcctggcgctg
cagcagaagctcggcttcgtcacgcgcgagccgcgctgggcggtggcgcacaaatacccg
gcgcaggaagcgctgaccacggtgcaggacatcgaggtgcaggtcggccgcaccggcaag
ctgacgccggtggcgcggctggcgccggtgttcgtcggcggcgtgacggtcaccaatgcc
acgctgcacaacgaatcggaaatacgccgcaaggacgttcatgtcggcgataccgtcgtc
gtgcgccgtgccggcgacgtgattcccgaagtcgtgtcggtgttgtcggacagacggccg
ccgcacgcgcgggcattctccatgccgatgaactgcccggtgtgcggctccgacgtggtg
cgcgaagaaggcgaaatcgatcaccgctgcaccggaggtctgtactgcgcagcgcagcgc
aagcaggccctgctgcatttcgccggccggcgggcgatggatgtcgaggggttgggcgac
aagctggtcgaacagctggtcgacggcggcctgatccgcagcctgcccgacctgtaccgg
ctgggtgtgctgaagctggccgaactggaccgcatggcggacaagtcggccgaaaatctg
gtggccgcgctggaaaagtcgaagacgacgacgctcggccgcttcctgttcgcgctcggc
atccgccatgtcggcgaggcgacggcgaaggatctggcgcgtcatctgggcagtatggac
cgcatcatggatgccagcgaagccgaactggcgcaggtgccggacgtcgggccggtggtc
gcggcgagcatccaccgctttttcgcgcagccgcacaaccgcgaagtggtcgaacagctg
cgggcctgcggcatcgtgtgggaagagggcgaaatgcaggtggccagcggcccgctggtc
ggcaagaccgtggtgctgaccggcacgctgccgacgctgtcgcgcgacgaggcgaaggat
atgctcgaggcggccggggcgaaagtggccggttcggtatcgaaaaagacggactttgtg
gtggccggcacggatgccggctccaaactcacaaaagcgcaagaactgggtattaccatc
ctcgatgaatccgggctgctgtcgctgctcggcaacagggagtcataa
DBGET
integrated database retrieval system
