Phytobacter sp. MRY16-398: MRY16398_14760
Help
Entry
MRY16398_14760 CDS
T05735
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mety
Phytobacter sp. MRY16-398
Pathway
mety03030
DNA replication
mety03410
Base excision repair
mety03420
Nucleotide excision repair
mety03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mety00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MRY16398_14760 (ligA)
03410 Base excision repair
MRY16398_14760 (ligA)
03420 Nucleotide excision repair
MRY16398_14760 (ligA)
03430 Mismatch repair
MRY16398_14760 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mety03032
]
MRY16398_14760 (ligA)
03400 DNA repair and recombination proteins [BR:
mety03400
]
MRY16398_14760 (ligA)
Enzymes [BR:
mety01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MRY16398_14760 (ligA)
DNA replication proteins [BR:
mety03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MRY16398_14760 (ligA)
DNA repair and recombination proteins [BR:
mety03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MRY16398_14760 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MRY16398_14760 (ligA)
MMR (mismatch excision repair)
DNA ligase
MRY16398_14760 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MRY16398_14760 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
DZR_2
Motif
Other DBs
NCBI-ProteinID:
BBE76420
LinkDB
All DBs
Position
1541301..1543316
Genome browser
AA seq
671 aa
AA seq
DB search
MESIEQKLTELRTTLRHHEYLYHVMDTPEIPDAEYDRLLRELRELEAQHPDLITPDSPTQ
RVGAAPLASFSQVRHEIPMLSLDNVFDEQSFLAFNKRVQDRLKSTDALIYCCELKLDGLA
VSILYENGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHL
GRLLRFKEWGLPVSDRVTLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIARLGLRIGDKVVIRRAGDVIPQVVNVVESERPDGTREVVFPAHCPVCGSDVERVEG
EAVTRCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALESAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEA
ASIEELQKVPDVGKVVAAHVFNFFAEESNRDVIGQLLAEGVRWPAPVVINAEEIDSPFAG
KTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVI
DEAEMLRLLGA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaatcgaacaaaagctcactgaactacgaaccactcttcgccatcacgaatat
ctttatcatgtcatggatacgcctgagatcccggatgcggaatatgacaggctgctgcgt
gaactccgcgagcttgaggcgcagcatcctgatctcatcacgccggattcacccacacag
cgtgtgggtgccgcgccgctggcctcatttagccaggtacgccatgaaatcccgatgctg
tcgcttgataacgtcttcgatgagcagagctttcttgccttcaataaacgcgttcaggat
cgattgaaaagtaccgatgcgctcatttactgctgcgagctgaaacttgatggcctggct
gtcagcatcctctatgaaaacggcgtgctggtgcgtgccgcaacccgtggcgatgggacg
accggtgaggacattaccaccaacgtacgcacgatccgcgctattccgttgaaactgcat
ggcgacaatattccggcgcgtctggaagtgcgtggtgaagttttcctgccccaggccggg
tttgaaaaaattaacgaagaagcgcgtcgcaccggaggcaaagtgtttgctaacccacgt
aatgcggcagctggctctctgcgtcagcttgacccacgtattacggcgaagcgaccactt
actttcttctgttatggcgtgggcgtgcttgaaggcggtgaactgcccgatacccacctc
ggacgcttgttgcgctttaaagagtggggtttaccggtcagcgacagggtgacgctgtgc
gactcgccggaggcggtgctggctttttatcacaaggtagaagaggaccgcccgacgctg
ggctttgatatcgatggcgtggtcattaaggtcaattccctggcgctccaggaacagctt
ggtttcgttgctcgcgcgccgcgttgggcggtggctttcaaattccctgcccaggagcag
atgacgtttgttcgtgacgtcgaatttcaggtggggcgtacgggggctattacccccgtt
gcgcggctggagccggtacatgtcgcaggtgtgctggtgagtaatgccacgttgcataat
gcggatgaaatcgcccgccttggtctgcgcattggcgataaagtcgtgattcgtcgtgcg
ggcgatgtaattccccaggtggtcaatgtggtggagtctgagcgtcctgatgggacccgg
gaagtcgtatttccagcccactgcccggtatgtggttcggatgtagagcgcgtggaaggc
gaagcggttactcgctgtaccggggggttgatttgcggcgcacagcgcaaagaagcgctg
aaacattttgtctcccgccgggcaatggatgttgacgggatgggcgataaaattatcgac
caactggtggaaaaagagtatgtccatacgcctgccgatctgttccgtctgacggcaggt
aagctgacgggtctggatcgtatgggaccgaaatcggcacaaaacgtagtcaatgcatta
gaaagtgcaaaagagaccacatttgcccgtttcctgtacgcgctgggtatccgcgaagta
ggcgaagccacagcggcggggcttgcggcgtacttcggtactctggaggcgctggaagcg
gcttccattgaggaactgcaaaaagtacctgatgtaggcaaagtggtcgcggcgcatgtc
tttaacttttttgccgaagagagtaaccgcgatgtgattggccaattgctggcagagggc
gtgcgctggcctgcgccggtcgttattaacgccgaagagatagacagcccgtttgccggt
aaaaccgtagtgctgaccggtagcctgagccagatgtcgcgcgatgatgccaaagcccgc
ctggttgagcttggcgcgaaagtggcaggcagtgtgtcgaaaaagacggatctggttatc
gccggcgaggccgcgggttccaagcttgcgaaagcacaggagttgggcattgcggtgatt
gatgaagcggaaatgctacggctgctgggtgcgtaa
DBGET
integrated database retrieval system
