Methylomonas sp. UP202: QC632_09260
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Entry
QC632_09260 CDS
T10336
Name
(GenBank) helix-hairpin-helix domain-containing protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
meup Methylomonas sp. UP202
Pathway
meup03030
DNA replication
meup03410
Base excision repair
meup03420
Nucleotide excision repair
meup03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
meup00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QC632_09260
03410 Base excision repair
QC632_09260
03420 Nucleotide excision repair
QC632_09260
03430 Mismatch repair
QC632_09260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
meup03032
]
QC632_09260
03400 DNA repair and recombination proteins [BR:
meup03400
]
QC632_09260
Enzymes [BR:
meup01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QC632_09260
DNA replication proteins [BR:
meup03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QC632_09260
DNA repair and recombination proteins [BR:
meup03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QC632_09260
NER (nucleotide excision repair)
GGR (global genome repair) factors
QC632_09260
MMR (mismatch excision repair)
DNA ligase
QC632_09260
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QC632_09260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
DNA_ligase_ZBD
DUF7575
A2L_zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
WGS87931
LinkDB
All DBs
Position
complement(2128640..2130595)
Genome browser
AA seq
651 aa
AA seq
DB search
MFSDSHRQILDQANLNFSADQLARVTELLANQALINAAGDEDLIAALEVANALYRAGAPI
VSDADYDFVYLNELKRRQPEHPLLHEVEPEPLFAGKTVDLPVVMLSTDKAYSREDIERWA
ARIEKAAADIGEDFRALTFKVTPKLDGYAAYDDGQLLYTRGDGRKGQDITRVFERGLQVA
GQGARGLGAGEIVVGRRYFDENLAEHFDNPRNFQASVIKEKELEEHALKAIADHAAVFFP
FALLPHWSGPWSELIADFEAIVQDIWHKVDYDVDGVILEITDEPLKQYLGATRHHHRWQI
AYKENLATANVKVVSVTPQTSRSGRITPVAELEPTRLSGALLSRATAHHYKMVVDKGIGP
GALIRLARSGEVIPKIEEVLEPAKPEVPSHCPSCGHELIWDNDYLICPNNLACPAQISNS
MEHFFRMLKNNDGFGAATIKKLYEYGIRRVDEIYALTAEQFESMGFGPKQSQNLVEQLSR
SRSEAVEDWRFLAAFGVFRMGLGNCERLLAHYPLDQIFGLTEADIVAIEGFAEKTAAVIS
EGFANIKDLYEKLTGLGFNLQASQRKGDSSAHPLSGKTLVFTGTLHSGSRDDLAKQAKAK
GAKVGSSVSAKTDYLVAGDNVGANKTAAARDKGVTVIDEAEFLQLLNGDVE
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgttttccgatagtcaccgccaaattctcgatcaagccaacttaaactttagcgccgac
caattggcccgcgttactgagctactcgccaaccaagcattgatcaatgccgccggcgac
gaagatttaatcgccgcgcttgaggtcgccaacgccctctaccgcgcgggcgcccccatc
gtcagcgacgccgactacgatttcgtgtatctaaacgagttaaagcgacgccaacccgag
catcccctgcttcacgaagtcgagcctgaaccgttattcgccggcaagaccgtcgatttg
ccggtggtgatgctgtccaccgacaaggcttacagccgcgaagacatcgaacgctgggcg
gcacggatagagaaagccgccgccgatatcggcgaggactttcgcgcgctgaccttcaag
gtgacgcccaaattggacggctacgccgcctacgacgacggacaattgctgtatacacgg
ggtgacggccgcaagggtcaggacatcacccgggtgttcgagcgcggcttgcaagttgcc
gggcaaggcgcgcgcggcctgggtgccggcgaaatcgtcgtcggccgccgctatttcgac
gagaatctggccgaacacttcgataacccccggaactttcaagccagcgtcatcaaggaa
aaagaacttgaggaacatgctttaaaagccatcgccgaccacgcggcggtgttttttccg
tttgccttgctgcctcattggtccggtccgtggagcgaactgatcgccgatttcgaagct
atcgttcaggacatctggcataaagtcgattacgacgtcgacggcgtgattctggaaatc
accgacgagccactcaagcaatacctcggcgcgacccgccatcatcaccgctggcagatc
gcctacaaggaaaacttggcgaccgccaacgtcaaagtcgtgagcgtaacgccgcaaacc
tcgcgttccgggcgtatcacgccggttgccgagctggaaccaacccgcctgagcggcgcc
ctgctctcccgcgcgacggcccaccattacaaaatggtggtcgataaaggcataggtccc
ggcgctttgattcgcttggcccgctccggcgaagtcatccccaaaattgaagaagtcctg
gaacccgccaaacccgaagtgccgtcgcactgccccagttgcggtcacgagctgatttgg
gataacgattatctgatctgccccaacaatttggcttgccctgcccaaatcagcaacagc
atggaacattttttccggatgctgaaaaacaacgacggcttcggcgccgcgacgatcaaa
aaactatacgagtacggcatccgccgcgttgacgaaatctacgcgctgaccgccgaacaa
ttcgaaagcatgggcttcggccccaaacaatcgcaaaatctggtcgagcaactgtcgcgc
agccgtagcgaagcggtcgaggattggcgttttctggccgcattcggcgtgtttcgaatg
ggtttgggcaattgcgagcggctgttggctcactacccgctcgaccagattttcgggctg
accgaagccgacatcgtcgccatcgagggtttcgccgaaaaaactgcggcggtgatcagc
gaaggcttcgccaacatcaaggacttgtacgaaaagctgaccgggcttggcttcaacctc
caagccagccaacgcaaaggcgattcgtcggcgcatccgctatccggcaagaccctcgtc
ttcaccggcaccctgcacagtggcagccgggacgacctggccaagcaagccaaggccaag
ggcgccaaggtcggcagctctgtgtccgccaagaccgactacctggtagccggcgataac
gtcggcgccaacaaaaccgccgccgcccgcgacaagggcgtgaccgtcatcgacgaagcg
gaatttctgcaactattaaacggagacgtggaatga
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