Methylorubrum extorquens PA1: Mext_4642
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Entry
Mext_4642 CDS
T00640
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mex
Methylorubrum extorquens PA1
Pathway
mex03030
DNA replication
mex03410
Base excision repair
mex03420
Nucleotide excision repair
mex03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Mext_4642
03410 Base excision repair
Mext_4642
03420 Nucleotide excision repair
Mext_4642
03430 Mismatch repair
Mext_4642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mex03032
]
Mext_4642
03400 DNA repair and recombination proteins [BR:
mex03400
]
Mext_4642
Enzymes [BR:
mex01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Mext_4642
DNA replication proteins [BR:
mex03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Mext_4642
DNA repair and recombination proteins [BR:
mex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Mext_4642
NER (nucleotide excision repair)
GGR (global genome repair) factors
Mext_4642
MMR (mismatch excision repair)
DNA ligase
Mext_4642
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Mext_4642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
ABY33010
UniProt:
A9VWA4
LinkDB
All DBs
Position
complement(5193862..5196306)
Genome browser
AA seq
814 aa
AA seq
DB search
MPSTPLSAAVEALSEDAAQARHAELSRAIERANQLYYNEDAPELTDAEYDALRQELEAIE
ARFPALTGTTEASAGVGAKPSEKFAKVRHAVPMLSLGNAFADEDVDEFVARVRRFLNLPA
EESVAFTAEPKIDGLSLSLRYEAGRLVTAATRGDGEVGENVTANALTVDDIPETLSGENI
PEVLEVRGEVYLSHEDFAAINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLRFFA
YAWGEVSEPFTDTQSAVLERFRGWGLPVNPRTKLCRSAEEMIAHYRTIEAERAGLGYDID
GVVYKVDDLGFQRRLGFVSRAPRWALAHKFAAQEAITELLAIDINVGRTGSLNPLARLKP
VTVGGVVVSNATLHNEGYVQGVGADGEPIREGRDIRVGDTVIVVRAGDVIPKVRDVVIEK
RPADAVPYVFPDTCPACGSRAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSRNG
FDLEGFGQTYIEVLFEAGLVKQPADLFRLEFEPLKAAIVARRETLSAQRRSEGEPAPKKP
TKKKGEEEDKAIKNLLASLDARRTIPLNRFLFALGIPQIGESTAKALAKRFPDMPSLMAA
LEAATREQAGRDWLELSALPRIGPGTRDRLFETLDPLPGEAMQDLSLGARLRGRLTPSQR
EAVLAHYGSEEKVDAALERAASQRPGDAYRLFADDGEIGPVATDSLIQFFSEPHNDAAVR
ALLEEVGTEPLATTTSAAAFAGKTVVFTGSLEKMTRSEAKATAERLGAKVSGSVSAKTDL
VVAGPGAGSKLKDAEKHGVKVVSEDDWLAMLAEA
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atgccgagcacgcccctttccgccgccgtcgaagccttgagcgaggatgccgcccaggcg
cgccatgccgagctatcgagggcgatcgagcgggcgaaccagctctactacaacgaggac
gcgcccgaactcaccgacgccgaatacgacgccctgcgccaggagctggaggcgatcgaa
gcgcgctttcccgcgctgaccggcaccaccgaggcgagcgcgggcgtcggcgccaagcct
tcggaaaagttcgcaaaggtccggcacgcagtgccgatgctctcgctcggtaacgccttc
gccgacgaggacgtggacgagttcgtggcccgcgtgcgtcgcttcctcaacctgccggcc
gaggagtcggtcgccttcaccgcggagccgaagatcgacgggctgtcgctgtcgctgcgt
tacgaggcgggccggctcgtcaccgcggcgacgcggggcgacggcgaggtcggcgagaac
gtcaccgccaacgcgctgacggtggacgacatcccggaaacgctctccggcgaaaacatc
cccgaggtgctggaggtgcgcggcgaagtctacctgtcgcacgaggatttcgcggccatc
aacgcacgccaggaggcggcgggcaagccgctcttcgccaatccgcgcaacgccgcggcc
ggctcgctgcgccagctcgatccggcgatcaccgcgtcgcgccccttgcgcttcttcgcc
tatgcctggggcgaggtctccgagcccttcaccgacacgcaatcggcggtgctggagcgg
ttccgcggctggggcctgccggtgaacccgcggaccaagctgtgccgctcggccgaagag
atgatcgcgcattaccgcaccatcgaggcggagcgggcgggtctcggctacgacatcgac
ggcgtcgtctacaaagtggacgacctcggcttccagcggcggctcggcttcgtcagccgc
gcgccgcgctgggcgttggcgcacaaattcgcggcgcaggaggcgatcaccgaactcctc
gccatcgacatcaatgtcggccgaaccggctcgctcaacccgctggcgcgcctcaagccc
gtcaccgtcggcggcgtggtcgtctcgaacgcgactttgcacaacgagggctacgtccag
ggcgtgggcgccgacggcgagccgatccgcgagggtcgcgacatccgcgtcggcgacacc
gtgatcgtggtgcgcgcgggcgacgtcatcccgaaggtgcgggatgtggtgatcgagaag
cgcccggccgacgccgttccctacgtcttcccggatacctgcccggcctgcggcagccgg
gccgtgcgtgaactcaacccgcgtacgaaaaaactcgatgcgatccgccgctgcaccggc
gggctgatctgcccggcgcagggggtcgagcggctgaagcacttcgtgtcgcgcaacggc
ttcgacctcgaaggcttcggtcagacctatatcgaggtgctgttcgaggccggcctcgtg
aagcagcccgccgacctgttccgcctggagttcgaaccgctgaaggcggcgatcgtcgcc
cgccgcgaaacgctctccgcgcagcgccgtagcgagggcgagccggcgccgaagaagccg
actaagaagaagggtgaggaggaggacaaggcgatcaagaacctgctcgcctcgctcgac
gcccgccgaacaatcccgctcaaccgcttcctgttcgccctcggcatcccgcaaatcggc
gaatcgacggccaaggcgctggccaagcgcttccccgacatgccctccctgatggcggcc
ctcgaagcggccacgcgggagcaggcaggccgcgactggctcgaactctcggcgctgccg
cggatcgggcccggcacccgcgaccgcctgttcgagaccctcgacccgctgcccggcgag
gcgatgcaggatttgagcctcggcgcccgcctgcgggggcggctgacgccgtcccagcgc
gaggccgtgctcgcccattacggcagcgaggaaaaggtcgacgcggcgctggagcgggcc
gcctcgcagcgccccggcgacgcctaccggctgttcgccgacgatggcgagatcggcccc
gtggcgacggattcgctgatccaattcttctccgagccgcacaacgacgcggcggtgcgg
gcgctgctcgaagaggtgggaaccgagccgctggccaccacgacctcggcggcggcgttt
gccggcaagacggtggtgttcaccggctccctcgagaagatgacccgaagcgaggccaag
gccaccgccgagcgcctgggcgccaaggtctccggctcggtctccgccaagaccgacctc
gtggtcgccggccccggcgccggctcgaagctcaaggacgccgagaagcacggggtgaag
gtggtctcggaggacgattggctggcgatgctggcggaggcgtaa
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