Metamycoplasma faucium: LQ356_03425
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Entry
LQ356_03425 CDS
T10859
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mfau Metamycoplasma faucium
Pathway
mfau03030
DNA replication
mfau03410
Base excision repair
mfau03420
Nucleotide excision repair
mfau03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mfau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LQ356_03425 (ligA)
03410 Base excision repair
LQ356_03425 (ligA)
03420 Nucleotide excision repair
LQ356_03425 (ligA)
03430 Mismatch repair
LQ356_03425 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mfau03032
]
LQ356_03425 (ligA)
03400 DNA repair and recombination proteins [BR:
mfau03400
]
LQ356_03425 (ligA)
Enzymes [BR:
mfau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LQ356_03425 (ligA)
DNA replication proteins [BR:
mfau03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LQ356_03425 (ligA)
DNA repair and recombination proteins [BR:
mfau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LQ356_03425 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LQ356_03425 (ligA)
MMR (mismatch excision repair)
DNA ligase
LQ356_03425 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LQ356_03425 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
BRCT_2
Nlig-Ia
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
WYM97224
LinkDB
All DBs
Position
complement(748666..750672)
Genome browser
AA seq
668 aa
AA seq
DB search
MDNTKIKKEILDLQKKINEWDNAYYNLDSPIVSDEIYDTEINKLIKLEKQYASLFTYEEL
KNSPTQKINASSLTIFKKVNHDYPMLSLNKAYSLEEIQKFIDNIKKNTLDYSLFIEPKID
GLSISLKYHNGKLIQALTRGDGLVGEDVTQNALQISDIPKEIDYKKDLEVRGEVYLSLSI
FNELNNNLKLKGNIPFSNPRNAAAGTLRQLDPKIVAKRNLSAFLYYIINHQEHNIKTMNE
TFMFLQKYNFKTTNIYKVLTSLDEIEKYINDFKNQKLLLDYETDGIVIKLNELKYYDMLG
QTQKFPHWAIAFKYEPNIAETKIKSIFVTIGRTGLVTYNCSLDPTQISGSIVEYATLNNY
NYVKELNLNVNDKVYVKKAGEIIPCIIGLVSYKNKIDVYPHIDKCPYCNSLLYNANNYLE
EYCLNRNCPEINKRKLIHFASKDCMNFFSMGEKIINKFIQLGYLNSVTDFYTLKEYIASL
TKLDNFGPKSILKILDSIEKSRENSLESLLFGLSIKHIGQKVATFIASKVLKLSNFLTYN
FDLLISYNEIGEKIIGSLKQWVSEQENINIVNKLIDLGLDLKYKSNIKSKTFENISFVIT
GTLSKPRNYFEQIIKTNNGNIMNAISKKTTYLLCGDDAGSKLKKAKELNIKIISEDEFYN
LLKTNESK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacaacactaaaataaaaaaagaaattttagatttacagaaaaagattaatgagtga
gacaatgcttattataatttagattcaccgatagtatcagatgaaatatatgacacagaa
atcaataaattaattaaactcgaaaaacaatatgcttctttgtttacatatgaagaatta
aaaaattcgccaactcaaaaaattaatgctagttctttaactatatttaaaaaagtaaat
catgattatcctatgctttcattaaataaagcatattcattagaagaaattcaaaaattt
attgataatattaaaaaaaatacgttagattattctctttttattgaaccaaaaattgat
ggtttatctatttccttaaaatatcataatggaaaattaattcaagcactaacaagagga
gatgggcttgttggtgaagatgtaactcaaaatgcattacaaattagtgatatacctaaa
gaaatagattataaaaaagatttagaagttagaggcgaagtttatttatcattatcaatt
tttaatgaattaaataataatttaaaattaaaaggaaacatacctttttcaaatccgaga
aatgcagctgcaggcactttaagacaacttgatcctaaaattgttgctaaacgaaatctt
tctgcttttttatactatataattaatcaccaagaacataatattaaaacaatgaatgaa
acttttatgtttttgcaaaaatataattttaaaacaactaatatttataaagttttaact
tcattagatgaaattgaaaaatatattaatgattttaaaaatcaaaaattattgctagat
tatgaaactgatggaatagttattaaacttaatgaacttaaatattatgatatgcttggc
caaactcaaaaatttccacattgggcaatagcttttaaatatgaaccaaacattgctgaa
acaaaaataaaaagtatttttgtaacaattggtagaacgggattagttacatataattgt
tctttagatccaactcaaattagtggtagtattgttgaatatgcaaccttaaataactat
aattatgttaaggaattaaatcttaatgttaatgataaagtttatgttaaaaaagcaggt
gaaataataccctgcataattggtcttgttagttataaaaataaaattgatgtatatcca
catattgataaatgtccttattgcaatagtctcttgtataatgcaaataattatttagaa
gaatattgtttaaatagaaattgccctgagataaataaacgtaaattaattcattttgct
tcaaaagattgtatgaatttcttttcaatgggcgaaaaaattatcaataaatttattcaa
ttaggttatcttaattcagtaactgacttctatactttaaaagaatatattgcatcatta
acaaaattagataattttggacctaaatcaattttaaaaattcttgattcaatagaaaaa
tcaagagaaaatagtttagaaagtttactatttggtttatcaattaaacatataggacaa
aaagttgcaacttttattgcctctaaagttttaaaactaagtaatttcttaacatataat
tttgatctattgatatcttacaatgaaataggtgaaaaaattattggttccttaaaacaa
tgagtatctgaacaagaaaatattaatatagttaacaaattaatagatttaggtttagat
ttaaaatataaatctaatattaaaagtaaaacatttgaaaacatcagttttgtaataact
ggtacgctttcaaaacctagaaattactttgaacaaattattaagactaacaacggaaat
attatgaatgcaatatctaaaaaaaccacatatttattatgcggagatgatgcaggatct
aaacttaaaaaagccaaagaattaaacattaaaattatttcagaagatgaattttataac
ttattaaaaacaaacgaatcaaaataa
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