Myxococcus fulvus: MFUL124B02_32850
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Entry
MFUL124B02_32850 CDS
T06896
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mfb
Myxococcus fulvus
Pathway
mfb03030
DNA replication
mfb03410
Base excision repair
mfb03420
Nucleotide excision repair
mfb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mfb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MFUL124B02_32850
03410 Base excision repair
MFUL124B02_32850
03420 Nucleotide excision repair
MFUL124B02_32850
03430 Mismatch repair
MFUL124B02_32850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mfb03032
]
MFUL124B02_32850
03400 DNA repair and recombination proteins [BR:
mfb03400
]
MFUL124B02_32850
Enzymes [BR:
mfb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MFUL124B02_32850
DNA replication proteins [BR:
mfb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MFUL124B02_32850
DNA repair and recombination proteins [BR:
mfb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MFUL124B02_32850
NER (nucleotide excision repair)
GGR (global genome repair) factors
MFUL124B02_32850
MMR (mismatch excision repair)
DNA ligase
MFUL124B02_32850
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MFUL124B02_32850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
RNA_pol_A_CTD
RUBY_RBDX
POLH-Rev1_HhH
Motif
Other DBs
NCBI-ProteinID:
AKF83114
LinkDB
All DBs
Position
8477161..8479179
Genome browser
AA seq
672 aa
AA seq
DB search
MDDFKKAEARARELRRELAHHNHRYYVLDSPEISDIQYDTLMRELQGLEEKHPTLQTPDS
PTQRVGGQAADEFGQVVHRVPMLSLANLFEDEGLVEFDERIRKMLGIPAVHYVCEPKLDG
LAIALRFEKGIFAQGATRGDGTTGEDVTGNLRTIRSLPMELFPEDGVKVPELLEVRGEVF
IRKADFQKLNEKREEEGEPLFANPRNAAAGSLRQLDPKETAQRPLSVYLYECVPTEGVPA
FKTHIEKLEYLKSLGLPINRYVRAAGIDGVRAAYDASLKGRHELPFEVDGMVVKVDDEDQ
RKRLGQVSKSPRWAVAYKFPPEEESTLVQDIGIQVGRTGALTPVAHLKPVKVGGVTVARA
TLHNEDELRRKDVRKGDTVFVRRAGDVIPEIVSTVLSKRPEDSKPFEFPKHCPVCGAVAV
KDEDGAVIRCTGASCPAQLVEKIRHFASRIAMDIEGLGDKLAAQLVATGTVKTFADLYAL
TKQKLMTLERMGDKSAENLLASIERSKTTTQRRFLYALGIRHVGDATAKALAEAFPHVKQ
LFDASLEDVSRVKDVGAVMAQVIHTFFQEPQNREAILALLNAGVAPAPPQVATGGPFIGK
TVVLTGSMTGMTREQAKEEVERRGGKVAGSVSRKTDFVVAGDDAGSKLKKAQELGVRILD
EAAFLGLLRADA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
gtggacgacttcaagaaagccgaagcccgagcccgcgagctccgtcgtgagctggcccac
cacaaccaccgctactacgtgctcgactcgccggagatcagcgacatccagtacgacacg
ctgatgcgcgagctgcaggggttggaggagaagcaccccaccctgcagacgccggactcg
cccacccagcgcgtggggggccaggccgcggacgagttcggccaggtggtccaccgcgtc
ccgatgctgtcgctcgccaacctcttcgaggacgagggactggtggagttcgacgagcgc
atccgcaagatgctcggcatccccgccgtccactacgtctgcgagcccaagctggacggg
ctcgcgatcgcgctgcgcttcgagaagggcatcttcgcgcagggcgccacccgcggcgac
ggcaccacgggcgaggacgtgacgggcaacctgcgcaccatccgcagcctgcccatggag
ctgttccccgaggacggggtgaaggtgcccgagctgctggaggtgcgcggcgaggtcttc
atccgcaaggcggacttccagaagctcaacgagaagcgcgaggaggagggcgagccgctc
ttcgccaatcctcgcaacgcggccgccggcagcctgcgccagctggacccgaaggagacc
gcgcagcgtccgctctccgtctacctctacgagtgtgtccccaccgagggcgtgcccgcc
ttcaagacgcacatcgagaagctcgagtacctgaagtcgctgggcctgcccatcaaccgc
tacgtgcgcgcggcgggcatcgacggggtgcgcgccgcctatgacgcgtcactcaagggc
cgccacgagctgcccttcgaggtggacggcatggtggtgaaggtggacgacgaggaccag
cgaaagcgcctgggccaggtctccaagagcccgcgctgggcggtggcgtacaagttcccg
cccgaggaggagtccacgctggtgcaggacatcggcatccaggtgggccgcaccggcgcc
ctcacgcccgtggcgcacctgaagcccgtgaaggtgggcggcgtcacggtggcgcgcgcc
acgctgcacaacgaggacgagctgcggcgcaaggacgtgcgcaagggcgacaccgtcttc
gtgcgccgcgcgggggacgtgattccggagatcgtctccacggtgctctccaagcgcccc
gaggactccaagcccttcgagttccccaagcactgcccggtgtgcggcgcggtggcggtg
aaggacgaggacggcgccgtcatccggtgcaccggcgcgtcctgccccgcgcagctggtg
gagaagatccgccacttcgccagccgcatcgccatggacatcgagggcctgggcgacaag
ctggccgcgcagctggtggccaccggcacggtgaagacgttcgcggacctgtacgcgctc
accaagcagaagctgatgacgctcgagcgcatgggcgacaagagcgcggagaatctgctg
gcctccatcgagcgctccaagacgaccacccagcgccgcttcctctacgcgctgggcatc
cgtcacgtgggcgacgccaccgccaaggcgctcgccgaggccttcccccacgtcaagcag
ctcttcgacgcgtccctggaggacgtctcccgcgtcaaggacgtgggggcggtcatggcg
caggtcatccacaccttcttccaggagccgcagaaccgcgaggccatcctcgcgctgctc
aacgccggtgtcgcacccgccccgccccaggtggccacggggggcccgttcattggtaag
acggtggtgctcaccggctcgatgacgggtatgacgcgggagcaggcgaaggaggaggtc
gagcggcggggtgggaaggtcgcgggaagtgtctcgcgcaagaccgatttcgtggtggcc
ggcgacgatgcgggcagcaagctgaagaaggcccaggaactcggggtaagaatcctggac
gaggcggcgttcctcgggctgttgcgagcggacgcctag
DBGET
integrated database retrieval system
