Mycoplasma feriruminatoris: D500_00198
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Entry
D500_00198 CDS
T07962
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mfer
Mycoplasma feriruminatoris
Pathway
mfer03030
DNA replication
mfer03410
Base excision repair
mfer03420
Nucleotide excision repair
mfer03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mfer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D500_00198 (ligA)
03410 Base excision repair
D500_00198 (ligA)
03420 Nucleotide excision repair
D500_00198 (ligA)
03430 Mismatch repair
D500_00198 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mfer03032
]
D500_00198 (ligA)
03400 DNA repair and recombination proteins [BR:
mfer03400
]
D500_00198 (ligA)
Enzymes [BR:
mfer01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D500_00198 (ligA)
DNA replication proteins [BR:
mfer03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D500_00198 (ligA)
DNA repair and recombination proteins [BR:
mfer03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D500_00198 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D500_00198 (ligA)
MMR (mismatch excision repair)
DNA ligase
D500_00198 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D500_00198 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
RNA_ligase
5_3_exonuc
HHH
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
UKS53863
LinkDB
All DBs
Position
222759..224765
Genome browser
AA seq
668 aa
AA seq
DB search
MSKDQVLLRINQLKEQLNLWSKQYYVDDNPTVDDTEYDLALKELISLENLYPEFITLDSP
SQKVGGMVSEKFEKVSHKTPMLSLGNVFSFEEFLDFNTQVSKVSNTLNNEYVAELKIDGL
SISLVYENGSLITAATRGNGIVGEDVTINVKTIKSIPLQISKKERVEVRGEVFLSKAEFE
KINQKRLLNNEDLFANPRNAAAGTLRQLDSKIVANRNLDAFLYYYISDDSNNLSQYESIL
KLNQLGFKTNKETKLCKNLDEIQAYINKYTDLKNDLDYQIDGIVFKINDKSLQNSLGFTS
KIPKWAIAYKFPAEIKQTKLLDIFATVGRTGKITYNAKLEPVSLMGATISAATLNNAEYI
KTKDLRINSVVKIKKAGDVIPEVIEAIKDDKFYELEKFKPDLYCPNCHSLLEKNEDEVDQ
FCINSNCSMKILRALQHFSSREAMNIVSLGDRSLEILFNLNIIKTISDIYRLEDHKERIL
EIENFGLKSYLNLIDSINQSKNNSFEKVLFGLGIRHIGSKTAKILAKQYQNIDNLMNASY
DELVQINSIGSSLALSIIDWFKIPDNINLINELKSFNVNFKYLGVKINLDSIIANKSFVI
TGTLSRPREEFKTLIENNAGKVIGSISKKTDYLLAGDNVGSKLEKAKKLGVKIIDEQQFF
DLLESMKG
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagatcaagttctgttaagaattaatcaattaaaagaacaattaaatttatga
tcaaaacaatattatgttgatgataatccaactgttgatgatactgaatatgatctagct
ttaaaagaattaattagtttagaaaatttatatcctgaatttataacattagattcacca
agtcaaaaagttggtggaatggttagtgaaaaatttgaaaaagttagtcataaaactcca
atgttaagtttaggaaacgtttttagttttgaagaatttttagattttaatactcaagta
agtaaagtttcaaatactttaaataatgaatatgtagctgaattaaaaattgatggttta
tcaatttctttagtttatgaaaatggaagtttaattacagctgctactagaggaaatgga
atagttggtgaagatgttactattaatgtaaaaacaattaaatcaattcctttacaaatt
agtaaaaaagaacgtgttgaagtaagaggagaagtctttttatcaaaagctgaatttgaa
aaaattaatcaaaaaagacttttaaataacgaagatttatttgcaaatccaagaaatgct
gctgctggaactttaagacagttagattcaaaaattgtagctaatagaaatcttgatgct
tttttatattattacattagtgatgattctaataatttatctcaatatgaatcaatttta
aaattaaaccaattaggttttaaaactaataaagaaactaagttgtgtaagaatttagat
gaaattcaagcatatataaacaaatatactgatttaaaaaatgatttagattatcaaatt
gatggaattgtttttaagattaatgataaaagtctacaaaacagtttaggttttactagt
aaaattccaaaatgagcaatagcttataaattcccagctgaaattaaacaaactaaatta
ttagatatatttgcaacagttggaagaactggaaaaattacttataatgccaaactagaa
cctgtatctttaatgggagctacaattagtgcagctactttaaataatgctgaatatatt
aaaacaaaagatttaagaattaatagtgtagttaaaattaaaaaagcaggagatgttatt
cctgaagttattgaagcaattaaagatgataagttttatgaattagaaaaatttaaacct
gatttatattgtccaaattgtcattccttattagaaaaaaatgaagatgaagttgatcaa
ttttgtataaattcaaattgttctatgaaaatattaagagcattacaacattttagtagt
cgtgaagctatgaatattgtaagtcttggtgatagaagtttagagattttatttaattta
aatattattaaaactatttcagatatatatcgattagaagatcataaagaacgaatttta
gaaattgaaaactttggattaaaaagttatttaaatttaattgattcaattaatcaatca
aaaaataactcatttgaaaaagttttatttggtttaggaataagacatattggaagtaaa
actgcaaaaatactagctaaacaatatcaaaacatagataatttaatgaacgctagttat
gatgaattagtgcaaattaattcaattggatcatctttagctttatctattattgattga
tttaaaataccagataatatcaatttaattaatgaattaaaatcttttaatgttaatttt
aaatatttaggagtaaaaattaatttagattcaattattgcaaataaatcatttgtaatt
acaggtactttatctcgtcctagagaagaatttaaaacacttattgaaaataatgcaggt
aaagtaattggatcaatttctaaaaaaactgattatttattagctggtgataatgtcggt
tctaaactagaaaaagctaaaaaattaggtgttaaaattatagatgaacaacaatttttt
gatttattagaatcaatgaaaggataa
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