Mariniblastus fucicola: MFFC18_24650
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Entry
MFFC18_24650 CDS
T06181
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mff
Mariniblastus fucicola
Pathway
mff03030
DNA replication
mff03410
Base excision repair
mff03420
Nucleotide excision repair
mff03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mff00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MFFC18_24650 (ligA)
03410 Base excision repair
MFFC18_24650 (ligA)
03420 Nucleotide excision repair
MFFC18_24650 (ligA)
03430 Mismatch repair
MFFC18_24650 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mff03032
]
MFFC18_24650 (ligA)
03400 DNA repair and recombination proteins [BR:
mff03400
]
MFFC18_24650 (ligA)
Enzymes [BR:
mff01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MFFC18_24650 (ligA)
DNA replication proteins [BR:
mff03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MFFC18_24650 (ligA)
DNA repair and recombination proteins [BR:
mff03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MFFC18_24650 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MFFC18_24650 (ligA)
MMR (mismatch excision repair)
DNA ligase
MFFC18_24650 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MFFC18_24650 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
PTCB-BRCT
HHH_5
HHH
HHH_3
BRCT_2
DNA_ligase_ZBD
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QEG22582
UniProt:
A0A5B9PCD2
LinkDB
All DBs
Position
complement(3118709..3120823)
Genome browser
AA seq
704 aa
AA seq
DB search
MAKLTAKDKKRAAELERVISHLDTAYERGDDCLHPDTRIIVSDGEYDAMRRELAALQPES
DLFATATASELVSAARKIVHDPPLTSIDKASHENIELQEEQLFKWIHDSLDNLGEQSGKV
LKAKGKEYKGEPVSYPANTFYEAWKLDGVAVALYYVDGKLDRAGLRPRDGVNGEAVTEQV
QYVSGVPAKLKKKVTCSIRGELICKLSDFEIVQKSLEEAGEKLRANPRNHTAGGIRQFKT
PEKTKLMRLSFIGYTIEGLANPPYKTEIERARFCNDELGVPYIETKPFRFEDLQTYENSI
ADLDFEVDGVIIGVNNLEDNEQLGRRGDPLTGNPKGKIAWKFREEEATPTIREIEWQTGR
TGKIVAVAIFDPVRLAGTNVSRATLHNAGFMERNQISIGSMISVRKAGKIIPKVTGVISG
QSKPDFPAECPACGAETKLQEGGSAEMLELVCTGDSCSAQNVSGLCHYLSTLGVLGLGES
RVSQLVEGGAVNDFADFYRLDVESAMATGLTHRQSTLAVAAVQMIPDPDKMDEDALDKAI
EASMQTKIEVPLWQLFAAFGIGAAGKSAGKALASHFGSLEKIRTASVEDLEKVDDIGTIT
AEAIVAWLDENSKQIDDLLDFVTPVGPKSGGTLDGVNFCFSGGFPEGKKHWESLVESHGG
KCTSSVSKKTNYLVAGSGSGSKSAKANKLEIPIIDTAELEKLLR
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
ttggccaaactgactgcaaaagacaaaaaacgtgctgctgaactggagcgcgtcatctct
cacctggacactgcctacgaacgcggcgacgactgccttcatcccgatacgcgaatcatc
gttagcgatggcgagtacgatgcgatgcggcgcgaactggcggctctgcaacccgaatcg
gatctgtttgcgaccgcgacggcatctgagttggtaagtgccgccagaaaaatcgtacac
gacccgccgctgacttcgatcgacaaagccagccacgaaaacattgaattgcaggaagaa
cagcttttcaaatggattcacgattccctggacaaccttggcgagcagtccggcaaggtt
ttgaaagcgaaaggtaaagagtacaagggcgaacccgtttcgtatccggcaaacacgttc
tatgaagcctggaaacttgatggagttgctgtcgctctttactacgtcgacgggaaactt
gaccgcgccggtttgcgaccgcgagatggagtcaacggggaagccgtcacggagcaggtt
caatatgtttctggcgttccggcgaagcttaaaaagaaagtcacctgttcgattcgcggc
gagttgatctgcaagctttcagactttgagattgttcagaaatcgctcgaagaagcgggc
gagaaactgcgagccaacccgcgaaaccacactgctggtggaatccgccagttcaagacg
cccgagaaaaccaagctgatgcgactcagcttcatcggctacacgatcgaagggcttgcg
aacccgccatacaaaactgaaatcgaacgggccaggttctgcaatgatgaacttggcgtg
ccgtacatcgagacgaagccatttcgctttgaagatttgcagacttacgagaacagcatt
gccgatctggacttcgaagtcgacggcgtgatcatcggcgtcaacaacctcgaagacaac
gagcaacttgggcgtcgtggcgatccgttgaccgggaatccgaaaggcaaaattgcctgg
aagtttcgtgaggaagaagccacgccaacgattcgcgaaatcgaatggcaaacgggacgc
accggaaaaatcgtggcagtcgcgatctttgatccggtacgcctggcgggcaccaacgtc
tcgcgggcgacattgcacaacgctggctttatggagcgaaatcagatttcgatcggtagc
atgatttccgtccgcaaggctggaaagattattccgaaagttactggcgtcatcagtggg
cagtcgaagccggacttccccgccgagtgccctgcttgcggcgcggagacgaaacttcag
gaaggcggttcggctgagatgctggaactggtttgcacgggggactcctgcagcgcccaa
aacgttagcggtctgtgccattacctttcgacgctgggcgtattggggttgggcgaaagt
cgagtcagccaactggtggaaggcggagccgtcaatgacttcgcggacttctatcggctg
gatgtcgaatccgccatggcgaccggtttgacgcatcggcaatcaacgctggccgtcgcc
gcggtccagatgattcctgatccggacaagatggatgaagatgcactcgacaaagccatc
gaagcctcgatgcaaacgaagatcgaagttccgctgtggcaattgtttgccgcgtttgga
atcggggcggcaggaaaatcggctggcaaagctctggccagccacttcggatcgttggaa
aagattcggacggcttcggtagaagacctcgagaaagtagacgacatcggcaccatcacg
gccgaggcgattgttgcctggctggatgagaactcgaagcagattgacgacctgttagat
ttcgtcactccggtgggtccgaaatccggcggaacgctcgacggagtcaacttttgtttc
agcggcggattcccggaaggcaaaaagcattgggaaagtctggttgagagtcatggaggc
aagtgcaccagtagcgtttcgaaaaaaacaaactacctggtcgccggctccggttcaggg
tcgaagagtgcgaaggccaacaaactggagattccgattatcgacactgctgaactggag
aaactgctccgatag
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