KEGG   Mycolicibacterium farcinogenes: K6L26_20985
Entry
K6L26_20985       CDS       T07595                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
mfg  Mycolicibacterium farcinogenes
Pathway
mfg03030  DNA replication
mfg03410  Base excision repair
mfg03420  Nucleotide excision repair
mfg03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mfg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    K6L26_20985 (ligA)
   03410 Base excision repair
    K6L26_20985 (ligA)
   03420 Nucleotide excision repair
    K6L26_20985 (ligA)
   03430 Mismatch repair
    K6L26_20985 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mfg03032]
    K6L26_20985 (ligA)
   03400 DNA repair and recombination proteins [BR:mfg03400]
    K6L26_20985 (ligA)
Enzymes [BR:mfg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     K6L26_20985 (ligA)
DNA replication proteins [BR:mfg03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     K6L26_20985 (ligA)
DNA repair and recombination proteins [BR:mfg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     K6L26_20985 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     K6L26_20985 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     K6L26_20985 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      K6L26_20985 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 Nlig-Ia PTCB-BRCT HHH BRCT_2
Other DBs
NCBI-ProteinID: QZH64496
LinkDB
Position
complement(4408989..4411106)
AA seq 705 aa
MSDEPTEAADAVLPEQPDADERRRWQELADEVRGHQFRYYVKDAPVISDAEFDLLLRQLQ
ALEAEYPELRTPDSPTQLVGGAGFATEFAPAEHLERMLSLDNVFDTDELSAWAARIKGEI
GDAAHYLCELKIDGVALALVYRQGRLVRAATRGDGRAGEDVTLNARTIDDIPEQLAHSDE
FPVPDVLEVRGEVFFRVADFEELNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRKLR
MICHGLGHIESAGGFPFTSLHDAYRALGQWGLPVSTHTAKVSGVAAVAERIAYWGEHRHD
VDHEIDGLVVKVDEVALQRRLGSTSRAPRWAVAYKYPPEEATTKLLDIRVSVGRTGRVTP
FAYMEPVKVAGSTVGLATLHNATEVQRKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGSE
RAFVMPTNCPECGTVLAPAKEGDADIRCPNTRSCPAQLRERVFHVAGRGAFDIEGLGYEA
ATALLQAGVIADEGDLFTLTADQLLRTDLFTTKAGELSANGKRLLANLDKAKAQPLWRVL
VALSIRHVGPTAARALATEFASLDAIVAAGEEQLAAVEGVGPTIAAAVVDWFTVDWHRAI
VDKWRAAGVRMADERDASIERTLEGLSIVVTGSLPGFSRDQAKEAIISRGGKAASSVSKK
TAYVVAGDAPGSKYDKAVELGIPILDEDGFRTLLAEGPQPTSDEG
NT seq 2118 nt   +upstreamnt  +downstreamnt
gtgagcgatgagccgaccgaagctgccgacgccgtgctgcccgaacagcccgatgccgac
gagcggcgacggtggcaggaactcgccgatgaggtccgcggacaccagttccgctactac
gtcaaagacgcgccggtcatctccgacgccgagttcgacctgctcctgcggcagttacag
gccctcgaggccgagtaccccgagttgcggaccccggattctccgacgcaactggtcggc
ggtgccgggttcgccaccgagttcgccccggcagagcatctggaacggatgctgtctctg
gacaacgtgttcgacacggacgagctgtcggcctgggcggcgcggatcaagggcgagatc
ggcgacgcggcgcactatctgtgcgaactgaagatcgacggagtggcactggcgctggtc
taccggcagggccggctggtccgggccgccacgcgtggtgacgggcgtgccggcgaagac
gtcacgctcaacgcccgcaccatcgacgacatcccggaacaactcgcgcattccgacgag
tttccggtgcccgacgtgttggaagtgcgcggcgaggtgttcttccgggtcgccgatttc
gaggagctcaacgctggtctggtcgccgagggcaagccgccgttcgccaatcctcgcaac
agcgcggcgggctcgctgcggcagaagaacccggcggtcaccgcgcggcgcaaacttcgg
atgatctgccacgggctggggcatatcgaaagtgccgggggttttccgttcacctctctg
cacgacgcctaccgggccctcggtcagtggggcctgccggtatccacccataccgcaaag
gtttccggggtggccgccgttgccgagcggatcgcctattggggcgaacaccgccacgac
gtcgaccacgagatcgacggcctggtggtcaaggtggacgaagtcgcgctacagcgtcgg
ctcggttcgacctcgcgcgcgccccggtgggccgtcgcctacaaatatccgccggaagag
gccaccaccaagctgctcgacatccgggtgagcgtgggccgcaccggccgggtcacgccg
ttcgcctacatggagccggtcaaggtggccggatcgaccgtcggactggccacgctgcac
aacgcgacagaggttcagcgcaaaggggtgctgatcggcgacaccgtggtgatccgcaag
gccggcgacgtcattcccgaggtgctcggcccagtggtcgacctgcgcgacggatccgag
cgtgccttcgtcatgccgaccaactgccccgaatgcggcaccgtgctggcccccgccaag
gaaggcgacgccgacatccgctgcccgaacacccgcagttgcccagcgcagttgcgggag
agggtgtttcacgtcgcgggccgtggcgcattcgacatcgaggggctcggctacgaagcg
gccaccgctctgctgcaggccggggtgatcgccgacgagggcgacctgttcacgctgacc
gctgatcagttgctccgcaccgacctgttcaccaccaaggccggcgaattgtcggccaac
ggcaagcgcttgctggccaatttggacaaggccaaggcccagccgctgtggcgggtgctg
gtcgccctgtcgatccgccacgtcggtcccaccgcggcgcgggccctggccaccgagttc
gccagtctggatgccatcgtcgccgccggagaagagcagctggccgcggtggaaggggta
ggccccacgatcgcagccgcggtcgtggactggttcaccgtcgactggcaccgcgcgatc
gtcgacaagtggcgcgccgccggtgtccggatggccgacgagcgtgacgccagcatcgag
cgcaccctggaaggcctgtcgatcgtggtaaccggctcgttgcccggattctcccgcgat
caggccaaggaggccatcatcagccgcggcggcaaggccgccagttcggtgtcgaagaag
accgcgtacgtggtggccggggatgcgcccggctcgaagtacgacaaggccgtcgaactg
gggatcccgatcctcgacgaggacggcttccggacgttgttggccgaaggcccgcaaccg
acgtccgacgaggggtag

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