Methyloraptor flagellatus: ABS361_02860
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Entry
ABS361_02860 CDS
T10624
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mflg Methyloraptor flagellatus
Pathway
mflg03030
DNA replication
mflg03410
Base excision repair
mflg03420
Nucleotide excision repair
mflg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mflg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABS361_02860 (ligA)
03410 Base excision repair
ABS361_02860 (ligA)
03420 Nucleotide excision repair
ABS361_02860 (ligA)
03430 Mismatch repair
ABS361_02860 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mflg03032
]
ABS361_02860 (ligA)
03400 DNA repair and recombination proteins [BR:
mflg03400
]
ABS361_02860 (ligA)
Enzymes [BR:
mflg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABS361_02860 (ligA)
DNA replication proteins [BR:
mflg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABS361_02860 (ligA)
DNA repair and recombination proteins [BR:
mflg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABS361_02860 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABS361_02860 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABS361_02860 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABS361_02860 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
PTCB-BRCT
TubC_N
divDNApol
Motif
Other DBs
NCBI-ProteinID:
XBY45247
UniProt:
A0AAU7XAT9
LinkDB
All DBs
Position
603436..605559
Genome browser
AA seq
707 aa
AA seq
DB search
MSDPNVSAVPVEQLSAEEAAAELARLAAEIAEHDRRYFQDDAPSISDAAYDALRRRNLAI
EARFPELKRADSPSERVGAGVAAAFAKVRHVVPMLSLDNAFSDADVVDFVERIHRFLRTH
GERVAITAEPKIDGLSCSLRYEAGRLVTAATRGDGAEGENVTANVKTIADVPQVLPEGVP
DVVEVRGEVYMSHADFQRLNERQAAAGEKVFANPRNAAAGSLRQLDAGVTRNRPLRFFAY
AWGDMSALPGATQMEIVEAFRAWGFPVNETVLCTSAEDLLAYYRGIEAKRAGLGFDIDGV
VYKVDRLDLRDRLGFVSRSPRWAIAHKFPAEKATTLLEAIDIQVGRTGAHTPVARLTPVT
VGGVVVTNATLHNADEIARLDVRIGDHVTVQRAGDVIPQILGFVPDALHDTRAPYVFPET
CQCSLKTPLQREETAAGEIGAIRRCSGEFACPFQRQEHLRHFVSRRAFDIEGLGEKQIAL
FFADEDLPVRAPADIFTLARRDAQNLKKLKDKEGFGTTSVKKLYEAIDERRRISLERFVY
ALGIRNVGETTARVLARAYGSWAAFHAAALAVAAGDAKTIEEMDSLDQIGETVIQSIARY
FSEPHNLAIVEDLVREMTGGIEDAERPKTDTVVAGKTVVFTGTLEKMTRDEAKAQAERLG
AKVAGSVSAKTDLVVAGPGAGSKLAKAQALGIEVIDEDAWIAMVGGG
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacccgaatgtttccgccgtccccgtcgagcagctcagcgcggaggaagccgcc
gccgaactggcgcgcctcgcggccgagatcgccgagcatgaccggcgctatttccaggac
gatgcgccttcgatctcggatgcggcctatgacgcgctgcgtcggcgcaatctggcgatc
gaggcgcggtttccggagctgaagcgcgcggattcgccttccgagcgcgtcggtgccggc
gtcgcggcggccttcgccaaggtccggcacgtcgtgccgatgctgtcgctcgacaatgcc
ttctcggatgcggacgtcgtcgatttcgtcgagcggatccatcgcttcctgcgcacccac
ggcgagcgcgtcgcgatcacggcggagccgaagatcgacgggctgtcctgctcgctgcgc
tacgaggccggccggctcgtcaccgcggcgacgcgcggcgacggcgcggagggcgagaac
gtcaccgccaacgtgaagacgatcgccgacgtgccgcaggtgctgcccgaaggcgtgccg
gacgtcgtcgaggtgcgcggcgaggtctacatgagccacgccgatttccagcgcctcaac
gagcggcaggcggcggcgggcgagaaggtgttcgccaatccgcgcaacgccgccgccggc
tcgctgcgccagctcgatgccggtgtcacgcgcaatcgacccttgcggttcttcgcctat
gcctggggcgacatgagcgcgctgccgggcgcgacgcagatggagatcgtcgaggcgttc
cgggcctggggctttccggtcaacgagacggtgctctgcacctcggccgaggatctgctc
gcctactatcgcggcatcgaggcgaagcgcgccgggctcggcttcgacatcgacggcgtc
gtctacaaggtcgatcggctcgacctgcgcgaccggctcggcttcgtgtcgcgcagcccg
cgctgggcgatcgcgcacaagttcccggccgagaaggcgacgacgctgctcgaggcgatc
gacatccaggtcggccgcaccggcgcacacacgccggtggcgcgattgacgccggtgacg
gtcggcggcgtggtcgtcaccaatgcgaccctgcacaatgccgacgaaatcgcgcggctc
gatgtccggatcggcgaccacgtcacggtgcagcgcgccggcgacgtcattccgcagatc
ctgggcttcgtgccggatgcgctgcacgacacgcgcgcgccttacgtcttccccgagacc
tgccagtgttcgctgaagacgccgctgcagcgcgaggagaccgcggcgggcgagatcggc
gcgatccgccgctgttcgggcgaattcgcctgtccgttccagcgtcaggagcacctgcgc
cacttcgtgtcgcgccgcgccttcgacatcgaaggtctgggtgagaagcagatagcgctg
ttcttcgccgacgaggacctgccggtccgggcgccggccgacatcttcacgctggcgcgc
cgcgacgcgcagaacctgaagaagctcaaggacaaggagggcttcggcaccacttcggtg
aagaagctctacgaggcgatcgacgagcggcgccgcatctcgctcgagcgcttcgtctat
gcgctcggcatccgcaatgtcggcgagacgaccgcgcgggttctggcgcgcgcctatggc
tcctgggcggccttccatgccgcggcgctggcggtggcggcgggcgatgccaagaccatc
gaggagatggattcgctcgaccagatcggcgagacggtgatccagtcgatcgcgcgctac
ttctccgagccgcacaatctggcgatcgtcgaggatctcgtgcgcgaaatgaccggtggc
atcgaggacgccgagcggccgaagaccgatacggtggtcgccggcaagacggtcgtgttc
accggcacgctggaaaagatgacccgcgacgaggccaaggcgcaggccgaacggctcggc
gccaaggtcgccggctcggtctcggccaagaccgatctggtggtcgccgggccgggcgcc
ggctcgaaactcgccaaggcgcaggcgctcggcatcgaggtgatcgacgaggacgcctgg
atcgcgatggtcgggggcgggtga
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