Marinobacter flavimaris: ACGK9W_05215
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Entry
ACGK9W_05215 CDS
T10818
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mfli Marinobacter flavimaris
Pathway
mfli03030
DNA replication
mfli03410
Base excision repair
mfli03420
Nucleotide excision repair
mfli03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mfli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACGK9W_05215 (ligA)
03410 Base excision repair
ACGK9W_05215 (ligA)
03420 Nucleotide excision repair
ACGK9W_05215 (ligA)
03430 Mismatch repair
ACGK9W_05215 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mfli03032
]
ACGK9W_05215 (ligA)
03400 DNA repair and recombination proteins [BR:
mfli03400
]
ACGK9W_05215 (ligA)
Enzymes [BR:
mfli01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACGK9W_05215 (ligA)
DNA replication proteins [BR:
mfli03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACGK9W_05215 (ligA)
DNA repair and recombination proteins [BR:
mfli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACGK9W_05215 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACGK9W_05215 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACGK9W_05215 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACGK9W_05215 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
RNA_pol_A_CTD
RNA_ligase
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
XKQ62627
LinkDB
All DBs
Position
1109444..1111480
Genome browser
AA seq
678 aa
AA seq
DB search
MSKATPDIIQRVEELRSAIDDHNYRYYVLDDPRVPDAEYDRLFRELQGLETDYPELASDT
SPTRRVGSAAETSFEEVVHRLPMLSLDNAFSEDELRDFDRRVKDRLGITEDVEYVCEPKL
DGLAVSLHYENGALTTAATRGDGYSGEDITANIRTIPSVPLKLRGDDVPDLVEVRGEVYM
PKDGFEQLNRRLAERGEKTFVNPRNAAAGSLRQKKSTVTARRPLEMCAYSVAVTDESLLP
DTQWEGLKRVQSWGFRINPEMRKAKGAEECLEAYSELMDKRDGLPYEIDGIVFKVNRLDQ
QKALGFVSRAPRWAIAQKFPAQEELTVIEDVEFQVGRTGAVTPVARLKPVFVGGVTVSNA
TLHNMDEIRRLDVHIGDTVFIRRAGDVIPQVVKVVAEKRPSGAREVELPRQCPVCDSDVI
QIEGEAVARCSGGLFCPAQRKEAIRHYASRKALDIEGLGDKWIDIMVDQGMVETVADLYR
LTTDDLVKLERMGEKSAANLVAAIDRARNPVLWRFLYALGIREVGEATAKALAGHFGTLE
AIAAADEESLQTVPDVGPIVAGHICSFFEQTHNRETLDALREAGVRWQEEEVREGEKPLK
GQTWVLTGTLSGMTRDEAKEKLESLGAKVAGSVSKKTACVVAGEAAGSKLAKAEQLEVPV
LDEAGLVALLEEHGQGAG
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaagccacgcccgacatcattcagcgtgttgaagaactccgttcggcgattgat
gaccataactaccgctattacgtgctggatgacccgcgtgttccagatgcggaatacgac
cggctgttccgggaattgcagggcctggaaaccgattatccagagttggcttcggacacg
tcgcccacgcggcgggttggcagcgccgcggaaaccagctttgaggaggtagtgcacagg
ctgcccatgctgtcgctggacaatgcgttcagcgaggacgaacttcgtgactttgaccgg
cgggtaaaagaccggctcggtatcactgaggacgtggagtatgtctgtgaaccgaagctg
gacgggctggcggtgagcctgcactacgagaatggcgccctgacgaccgccgccacccgg
ggggatggctattccggggaggacataaccgccaatatccgaaccattccctcggtgccg
ctgaagctccgtggcgacgacgtgcccgatctggtggaggtccgcggcgaagtctacatg
ccgaaggacggtttcgagcagcttaatcgccgcctggcggagcgtggcgagaagaccttc
gttaatccccgtaatgcggcggccggcagcctccggcagaaaaaatcgacagtaaccgcc
agacgccctctcgaaatgtgcgcctacagcgttgcggtaaccgacgaaagcctcttgccg
gatacccagtgggaggggctcaagagagtccagagctggggtttccgtattaatcccgag
atgcgcaaggccaagggcgcggaggaatgcctcgaagcctacagcgagctgatggacaaa
cgggacggactcccctacgaaatcgacggtatcgtcttcaaggtgaaccggcttgaccag
caaaaggccctgggttttgtatcccgggcccctcgttgggcgattgcccagaagtttccg
gctcaggaggaactcacggttatcgaggacgtggaattccaggtcggtcgtactggcgcg
gttaccccggttgcgaggttaaaacccgtgttcgtgggcggtgtaacggtgagcaacgcc
accctccataacatggacgaaattcgccgactggatgttcatatcggcgataccgtgttc
attcgccgcgccggagatgtgattccgcaggtagtcaaagtggtggccgaaaaacgcccc
tcaggcgcccgggaagtagaattgccccgacagtgcccggtgtgcgactcggatgttatc
cagatcgaaggtgaagccgttgcccgctgctctgggggcctgttctgccccgcgcagcga
aaggaagccattcgccactatgcctcccgcaaagccctcgatattgagggccttggagac
aagtggatagatatcatggtggatcagggcatggtggaaaccgttgccgatctgtatcgc
ctgaccaccgacgacctggtgaaacttgagcgaatgggagaaaagtcggcggccaatctg
gtggctgccattgatcgggccagaaaccccgtgctctggcggttcctttatgcccttggc
atccgggaggtgggggaggccaccgctaaagccctggcgggccacttcggaactctggag
gccattgctgcagcggatgaagagagccttcaaacggttccggatgtcgggccgatcgtt
gcgggtcatatctgtagctttttcgagcagacccacaatcgcgaaaccctggatgccctg
cgtgaagccggtgtgaggtggcaggaagaggaagtccgggagggagagaagcctctgaaa
ggccagacctgggtgctgaccggtacgctttccggaatgacacgggacgaagccaaagag
aagctggaatcccttggagccaaggtggccggaagcgtttctaaaaagacggcctgcgtg
gtggctggcgaggccgccggttccaaactggccaaggctgaacagttagaggtacctgtt
cttgatgaagccgggctggtggcgttgctggaagagcacggccagggcgcgggctaa
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