Miscanthus floridulus: 136486204
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Entry
136486204 CDS
T10264
Name
(RefSeq) 5'-3' exoribonuclease 4-like isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
mflo Miscanthus floridulus
Pathway
mflo04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
136486204
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136486204
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
136486204
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
136486204
NCBI-ProteinID:
XP_066339156
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Position
10:9967958..9978502
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AA seq
832 aa
AA seq
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MGIPSFYKWVVNKYPSIISPVKEEPEESPDGIIYDNLYLDMNCIIHCCFHPQDQMHADID
VCPPMTVSEVFESLFEYMDRLFRIVRPTRLLYLAVDGVSPCAKMNRVRRGRFHSARLARS
EEIEDYEMRKELRAQGKEEPPREISEVPDPNVIAPGTEFMERLSQALEYYIRARLNSDPW
WRDIMVILSDANVPGEGEHKIMSFIRAQRSMEGYDPNTRHCLFGHDADLIMLALASHEVH
FSILREDVLFPNQAETEGNPKKPFLFLNIWVLREYLEIEFKILDPVCEPDIERLIDDFIF
ICFLMGNDFIPHIPSLKMHEGAVDLLIEVYKTTFNKMEGYIINTDKVKDKHGAYLEVSRL
EIFFHELSMYEEKIFLKRYELKQDLLLKTYHEMLREASESERSELRQKLDDLLFNEERPY
DSIRLGLPGWKSRFFREYFGAKTSNEIGKLQNDMAQKYLEGLCWVLQCYFADVPSWRWYY
PFYVAPFVSDLKGLSRVEISFIVDKPLRPFDQLMAVLPMRSWCALPKCYNKIMGRKEFDY
PRLEHDTEGKHFLWNGISEELLLSVTKAVDKELMTHESRRNTTRQEKIFLHRDSSSLPHN
EVTEQTSDCSVQKLPIDSATSSVVSILFYLFILHSGIGGWIAPDDNDGFSDGFFHSPTTN
LQDITSDQTISGTFFNPEAANPVPRLLGNVRVPDKTVTGADISKRPLWHTYPGSRPPRII
QRPDTIWKPSTPASPREEHKNAGTGWIGRGRGNALAAATAAVETQLTRSSSYRRGGGFHR
VGMAQSRGSSSSRFDDDGAYSFRPLGSAPWTTGDSGRSGGAGHGGTAQPRGW
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgggaataccttctttctacaagtgggtcgtcaacaagtacccaagcatcatctcccct
gtgaaggaggaaccagaggagagccctgatggcatcatctatgacaacctctacctcgac
atgaattgcatcatccattgttgcttccacccacaggaccagatgcatgcagacatagat
gtgtgccctccgatgacggtcagtgaggtgtttgagtctttgtttgagtacatggaccgc
ttgttccgcatcgtcaggccaacaaggctcctctacttggcagtagatggtgtttctcct
tgcgccaaaatgaaccgtgtgcgaaggggacgtttccactctgccaggctggcaagaagt
gaggagattgaagattatgaaatgcggaaggaattaagagctcaagggaaggaggagcca
ccgcgagagatttctgaggttcctgaccccaatgtcatcgccccaggtaccgagttcatg
gagaggctatcacaagcccttgagtactacatccgtgccagacttaatagtgacccctgg
tggagagacatcatggtaatactctccgatgcgaatgttcctggagaaggagagcacaag
atcatgtctttcatccgtgcacaacgcagcatggaaggctatgatcccaacactcgacac
tgcttgtttgggcatgatgcagatctgataatgcttgctttggcatctcacgaagtccac
ttctctattttgcgtgaggatgtgctcttcccaaatcaggcagaaacagaagggaatccg
aagaaaccatttctgtttttgaacatatgggttctgagagagtacttggagattgaattc
aagatactggacccggtctgtgagcctgatattgagaggctaatagatgacttcatcttt
atttgtttcctgatgggaaacgatttcatcccacatattccatcacttaagatgcatgag
ggtgcagttgatcttctcattgaagtgtacaaaacaaccttcaacaaaatggaagggtat
attatcaacacagacaaagtcaaagataaacatggtgcatatctggaagtctcaaggttg
gaaatattttttcatgaactctccatgtatgaagagaaaattttcctcaaaagatatgaa
ctgaaacaggatttgttgctgaagacatatcacgaaatgttgcgtgaagcttcagaaagt
gaaagatcagaactgagacaaaaattagatgatctcctttttaatgaagaacgcccatat
gacagtataagactaggattaccaggatggaagtcccggtttttcagggagtatttcggt
gccaaaacttctaatgaaattggaaagctgcagaacgacatggctcaaaagtatttagaa
ggactttgttgggtgcttcaatgctattttgcagacgttccatcatggagatggtactac
ccattctatgttgctcctttcgtatctgatctcaaaggtctatctagggtcgagatatct
ttcattgtggacaaaccattacgaccatttgatcagcttatggcagttttaccaatgcga
agctggtgtgctcttccaaaatgttacaataaaataatgggccgcaaagaatttgactac
ccgaggttggagcatgacacagaggggaaacatttcttgtggaatggtatctctgaggaa
ctgctgctttcggtcaccaaagcggtggataaagagctcatgacccatgaatcgagacgg
aataccactaggcaagagaagatctttctgcacagggactcaagctctctgccacacaat
gaagttactgaacagacatcggactgttcagtgcagaagcttccgatagattcagctacg
agttctgtggtctctattcttttttatttatttattttgcatagtggaattggaggatgg
atagcgcctgatgacaatgatggcttcagcgatggtttcttccactcgcccacaacaaac
ctgcaggacattacgagtgatcagacaatatcaggtacgttcttcaaccctgaggcagca
aatccagttccaagactacttggcaatgtcagagtacctgacaagactgttaccggagcc
gacatctcgaagcggccactctggcacacgtacccgggctcaaggccgccgcgcatcatt
cagaggccggacaccatctggaagccgagcacgccggcgtcgccacgggaagagcacaag
aacgctggcacgggttggatcgggcgggggagaggaaacgcccttgctgccgccaccgcc
gccgtcgagacgcagctaacaaggagcagcagctacaggagagggggtggtttccatcgg
gtgggcatggcacaaagccgaggaagcagcagcagcaggttcgacgacgacggtgcgtac
agtttccggccgcttggaagtgcgccgtggaccaccggagatagcggccgaagcggaggc
gccggccatggcgggactgcccagccacgtggttggtag
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