Miscanthus floridulus: 136491390
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Entry
136491390 CDS
T10264
Name
(RefSeq) putative DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03450
Non-homologous end-joining
Brite
Enzymes [BR:
mflo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
136491390
DNA repair and recombination proteins [BR:
mflo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
136491390
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
136491390
NCBI-ProteinID:
XP_066343762
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Position
11:complement(83025372..83041121)
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AA seq
1219 aa
AA seq
DB search
MAAKVRFGLLVAMFNAMSGDKSSAKKRSRLRAFLDRAYVPSGGRDDYFSALRLVLPGLDR
ERGTYGLKEAALAAVLVDALGIAKDSTDAVRLTNWRRGGGGRNAGNFGLVAAEVLQRRQG
LTSGGLTIKEVNDALDRLAATENRSEKASILSNLIKKTNAVEMKWLLMIILNDLKLGISE
KSIFEEFHPDAQDLFNVTCDLKFVCEKLNDRSQRHKRQDIEIGKAVRPQLAMRVRDASAA
WKKLHGKQVVAECKFDGDRIQIHKNGEEIHFFSRSFLDHSEYTHGMSKIIKENILVDRCI
LDGEMLVWDTVLNHFAEFGSNQEIAKAAREGLETDRQLCYVAFDILYAGDTSVIHQSLTE
RHQILQKVVKPLKGHLEILIPTGGLNVRRPSDEPCWSIIAHSVEDVERFFKETIENRDEG
IILKDLDSKWEPGDRNGKWLKLKPDYIHAGADLDVIIIGGYYGSGRRGGEVAQFLVGLAV
PSDDNSYPKRFLSFCRVGTGLSDEERDALVTKLKPYFRKNEYPKKPPKFYEVTNNSKERP
DVWIESPDKSVIISVTSDIRTIKSEVFAAPYCLRFPRIQRVRYDKPWHECLDVQAFVDIV
HSSNGTTQRVADDNSLKNDDTKRSRTNKKVEKKKCVSVIPSHLMKTDVSGLKGETLIFAN
MIFCFVNIPSSYNLEYFHKLVVENGGSFSMNLNDSVTHCIAAEKKGIKYQAALRQGRIIH
YEWILDCCEEKHLLHLQPRYILFLADFARHKFPEEIDSYADYYYWDIENADLKQIFSNID
KVAGDSNMVNQYKKKHCIDERFCFFQGCCVYLHNAPLVNADYNVISDLALKRVKQDLTMH
GGQVCSSIAPATHLVVVSVLQAYNFDNLYKSFPPAERCYLHDKRLHVVSNKWLEDSVEKQ
MKLSETAYSLKPDTLEELEIERSEENVQPLDHKLEEHKEVERSHAKNVPRKRSRPTSSSR
TARAAPRPVRRIRPRRGNQKAKIGDDVESEESGPSECQDDQNLDTDDTSKVEEGITDKKK
GFPPPASKPARRTRATRGNQHTKIDDSGSEESGPCETGQDDQRLDTDYISKMEVDNSDKD
CGPPPGAQFFTLGEQEVKGVKLNTVEEKLDSPFQRTTAAEAMSSAPGEKIEQMVDPLHAM
LLDMLPLLGKKGTEDASRAPLAKVEKDPPAVGSSTSNSEILAPNAGTSGVPAPDPNAAPP
PKKKKVSYKDVASELLKDW
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaaggtgcggttcggcctcctggtggcgatgttcaatgccatgtcgggcgac
aagagttcagcgaagaagcgcagccgcctgcgcgcgttcctcgaccgcgcctacgtgccc
agcggcggtagggatgactatttcagcgcgctccgcctcgtgctcccggggctcgaccgc
gagcgcggcacctatgggctcaaggaggcggccctcgccgccgtgcttgtcgacgccctt
ggcatcgccaaggactctaccgacgccgtccggctcaccaactggcgccgcggcgggggt
ggccgcaacgccggcaacttcgggctcgtggccgctgaggtcctgcaacggaggcaaggt
ctaacttctggtggattgacgataaaggaggttaacgatgcacttgatcgtctagctgca
accgagaacaggtctgagaaggcctcaatactttctaatctgatcaagaaaaccaatgcc
gttgaaatgaagtggcttctgatgattattcttaacgatttgaaattggggataagtgag
aagagcatatttgaagaatttcatcctgatgcccaagacttgttcaatgtcacctgtgac
ttgaaattcgtctgtgagaagctcaatgaccgaagccagaggcataaacgccaggatata
gaaattgggaaggctgtcaggcctcagctagctatgagagtccgtgatgcttcagctgct
tggaagaagcttcatggaaaacaagtggttgctgagtgcaaattcgatggtgaccgtatt
caaatccacaaaaatggggaagagatccatttcttctctaggagctttcttgatcactct
gaatacacacatgggatgtcaaaaattattaaagaaaatatcctggttgacagatgtata
ttggatggagaaatgcttgtctgggacactgtacttaaccattttgctgaatttggttca
aaccaggaaatagctaaggctgcaagggagggattggagactgatcgacagttgtgctat
gttgcttttgacatcctttatgctggagacaccagtgttatccaccaaagtttgacagag
cggcatcaaattctgcagaaggttgtgaaacctttaaagggtcatcttgagattttgatc
ccaacaggtggtttaaatgtccgtcgtccttcagatgaaccatgttggtcaattattgca
catagtgttgaagatgttgaaagattcttcaaagagactatcgagaacagagatgagggc
attatactgaaggaccttgattccaaatgggaacctggtgaccgaaatggaaagtggctt
aaactaaagcctgattatatacacgcgggtgctgatctggatgttattattataggggga
tactatggatctggacgtcgaggaggagaggttgcacagtttttagttggccttgcagtc
ccttcagatgataatagttatcccaaaaggtttctttcattttgccgtgtcggtactggg
ctctctgatgaagagcgtgatgctcttgtcaccaaactgaagccttatttcaggaaaaat
gagtaccccaaaaaaccaccaaaattttatgaagttacaaataactcgaaggagaggcca
gatgtttggatcgagagccctgataagtcagtcataatatctgtaacaagtgacattcgt
acaatcaagtccgaggtatttgctgctccgtactgtttgaggttcccccgtattcagaga
gtgagatacgacaagccatggcatgagtgccttgatgtgcaagcatttgtggacattgtg
cattcaagtaatggtacaacacaaagggtggcagatgataacagtctgaagaatgatgac
acaaaacgctcaagaacaaacaaaaaagtggagaagaagaagtgtgtctcagtcatccct
tcacatctcatgaagactgatgtatcaggtcttaagggagaaaccctgatatttgccaac
atgattttctgttttgtcaacattccatcatcttataatctcgaatattttcataaactg
gttgtggaaaatgggggatctttctccatgaatctgaatgactctgttacgcactgcata
gctgcggagaagaaaggtatcaaatatcaggcagctttacggcagggaaggatcattcac
tatgagtggatattagactgttgtgaggaaaaacatcttcttcatttgcaacctaggtat
atactatttcttgctgattttgccaggcacaaatttcctgaagagattgattcatatgct
gactattactactgggacattgaaaatgctgacctcaagcagattttcagtaacatcgac
aaagttgctggtgattcaaacatggttaatcagtacaaaaagaagcattgcatagacgag
agattctgtttcttccagggttgctgtgtctacttgcataatgcacccttagtgaatgcg
gactacaatgtaatatctgatcttgcgctgaagagggtgaagcaggatctaacaatgcat
ggtggtcaagtctgcagcagcattgctccagctactcatttggttgtagtttcggtttta
caggcctataacttcgataacctgtacaagagcttccctcctgctgaaagatgttatcta
catgacaaacgattacatgttgtcagtaataagtggttggaagattcagtggagaaacaa
atgaagctctctgaaactgcttacagccttaaaccagatacactagaagaactagaaatt
gaaaggagtgaggaaaatgttcagcctctggatcataagcttgaggaacacaaggaggtt
gaaagatctcatgccaaaaatgtaccaaggaaaaggagcaggccaaccagtagttcaaga
actgcaagggctgctcctagaccagtccggcgaataaggcctagaagaggaaaccagaaa
gcaaaaataggtgatgatgttgaatctgaagaaagtggccccagtgaatgtcaggatgat
caaaatttggacacagatgatacctctaaggttgaagaaggtattaccgacaaaaagaaa
ggattccctccacctgcttctaaaccagcccggagaacaagggctacaagaggaaatcag
catacaaagatagatgacagcggatccgaagaaagtgggccttgtgaaacagggcaagat
gatcagaggttggacacagattacatctctaagatggaagtagataacagcgataaagac
tgtggaccaccaccaggtgctcagtttttcacattgggggagcaagaggtcaaaggtgtc
aaattgaacaccgtggaggagaaactagacagtcctttccaaagaacaaccgctgctgaa
gccatgagtagtgctccaggtgagaagatagaacaaatggttgatccattgcacgccatg
cttctggatatgctaccactcctgggcaagaaagggacagaagatgcaagtagggcaccc
ttggcgaaagttgagaaggatccacctgcggtaggaagttccacatccaattctgagatt
ctagcgccaaatgctgggacatccggggttccagccccagacccgaatgcagctcctccc
ccaaagaagaaaaaagtgagttacaaagatgtcgctagtgaacttctgaaagattggtga
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integrated database retrieval system
