Miscanthus floridulus: 136491392
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Entry
136491392 CDS
T10264
Name
(RefSeq) LOW QUALITY PROTEIN: putative DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
136491392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mflo03400
]
136491392
Enzymes [BR:
mflo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
136491392
DNA repair and recombination proteins [BR:
mflo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
136491392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
DNA_ligase_IV
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
136491392
NCBI-ProteinID:
XP_066343765
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All DBs
Position
11:complement(83066870..83076728)
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AA seq
1219 aa
AA seq
DB search
MAAKVRFGLLVAMFNAMSGDKSSAKKRSRLRAFLDRAYVPSGGRDDYFSALRLVLPGLDR
ERGTYGLKEAALAAVLVDALGIAKDSTDAVRLTNWRRGGGGRNAGNFGLVAAEVLQRRQG
LTSGGLTIKEVNDALDRLAATENRSEKASILSNLIKKTNAVEMKWLLMIILKDLKLGISE
KSIFEEFHPDAQDLFNVTCDLKFVCEKLNDRSQRHKRQDIEIGKAVRPQLAMRVRDASAA
WKKLHGKQVVAECKFDGDRIQIHKNGEEVHFFSRSFLDHSEYTHGMSKIIKENILVDRCI
LDGEMLVWDTVLNRFAEFGSNQEIAKAAREGLETDRQLCYVAFDILYAGDTSVIHQSLTE
RHQILQKVVKPLKGHLEILIPTGGLNVRRPSDEPCWSIIAHSVEDVERFFKETIENRDEG
IILKDLDSKWEPGDRNGKWLKLKPDYIHAGADLDVIIIGGYYGSGRRGGEVAQFLVGLAV
PSDDNSYPKRFLSFCRVGTGLSDEERDALVTKLKPYFRKNEYPKKPPKFYEVTNNSKERP
DVWIESPDKSVIISVTSDIRTIKSEVFAAPYCLRFPRIQRVRYDKPWHECLDVQAFVDIV
HSSNGTTQRVADDNSLKNDDTKRSRTNKKVEKKKCVSVIPSHLMKTDVSGLKGETLIFAN
MIFCFVNIPSSYNLEYFHKLVVENGGSFSMNLNDSVTHCIAAEKKGIKYQAALRQGRIIH
YEWILDCCEEKHLLHLQPRYILFLADFARHKFPEEIDSYADYYYWDIENADLKQIFSNID
KVAGDSNMVNQYKKKHCIDERFCFFQGCCVYLHNAPLVNADYNVISDLALKRVKQDLTMH
GGQVCSSIAPATHLVVVSVLQAYNFDNLYKSFPPAERCYLHDKRLHVVSNKWLEDSVEKQ
MKLSETAYSLKPDTLEELEIERSEENVQPLDHKLEEHKEVERSHAKNVPRKRSRPTSSSR
TARAAPRPVRRIRPRRGNQKAKIGDDVESEESGPSECQDDQNLDTDDTSKVEEGITDKKK
GLPPPASKPARRTRATRGNQHTKIDDSGSEESGPCETGQDDQRLDTDYISKMEVDNSDKD
CGPPPGAQFFTLGEQEVKGVKLNTVEEKLDSPFQRTTAAEAMSSAPGEKIEQMVDPLHAM
LLDMLPLLGKKGTEDASRAPLAKVEKDPPAVGSSTSNSEILAPNAGTSGVPAPDPNAAPP
PKKKKVSYKDVASELLKDW
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaaggtgcggttcggcctcctggtggcgatgttcaatgccatgtcgggcgac
aagagttcagcgaagaagcgcagccgcctgcgcgcgttcctcgaccgcgcctacgtgccc
agcggcggtagggatgactatttcagcgcgctccgcctcgtgctcccggggctcgaccgc
gagcgcggcacctatgggctcaaggaggcggccctcgccgccgtgcttgtcgacgccctt
ggcatcgccaaggactctaccgacgccgtccggctcaccaactggcgccgcggcgggggt
ggccgcaacgccggcaacttcgggctcgtggccgctgaggtcctgcaacggaggcaaggt
ctaacttctggtggattgacgataaaggaggttaacgatgcacttgatcgtctagctgca
accgagaacaggtctgagaaggcctcaatactttctaatctgatcaagaaaaccaatgcc
gttgaaatgaagtggcttctgatgattattcttaaagatttgaaattggggataagtgag
aagagcatattcgaagaatttcatcctgatgcccaagacttgttcaatgtcacctgtgac
ttgaaattcgtctgtgagaagctcaatgaccgaagccagaggcataaacgccaggatata
gaaattgggaaggctgtcaggcctcagctagctatgagagtccgtgatgcttcagctgct
tggaagaagcttcatggaaaacaagtggttgctgagtgcaaattcgatggtgaccgtatt
caaatccacaaaaatggggaagaggtccatttcttctctaggagctttcttgatcactct
gaatacacacatgggatgtcaaaaattattaaagaaaatatcctggttgacagatgtata
ttggatggagaaatgcttgtctgggacactgtacttaaccgttttgctgaatttggttca
aaccaggaaatagctaaggctgcaagggagggattggagactgatcgacagttgtgctat
gttgcttttgacatcctttatgctggagacaccagtgttatccaccaaagtttgacagag
cggcatcaaattctgcagaaggttgtgaaacctttaaagggtcatcttgagattttgatc
ccaacaggtggtttaaatgtccgtcgcccttcagatgaaccatgttggtcaattattgca
catagtgttgaagatgttgaaagattcttcaaagagactatcgagaacagagatgagggc
attatactgaaggaccttgattccaaatgggaacctggtgaccgaaatggaaagtggctt
aaactaaagcctgattatatacacgcgggcgctgatctggatgttattattataggggga
tactatggatctggacgtcgaggaggagaggttgcacagtttttagttggccttgcagtc
ccttcagatgataatagttatcccaaaaggtttctttcattttgccgtgtcggtactggg
ctctctgatgaagagcgtgatgctcttgtcaccaaactgaagccttatttcaggaaaaat
gagtaccccaaaaaaccaccaaaattttatgaagttacaaataactcgaaggagaggcca
gatgtttggatcgagagccctgataagtcagtcataatatctgtaacaagtgacattcgt
acaatcaagtccgaggtatttgctgctccgtactgtttgaggttcccccgtattcagaga
gtgagatacgacaagccatggcatgagtgccttgatgtgcaagcatttgtggacattgtg
cattcaagtaatggtacaacacaaagggtggcagatgataacagtctgaagaatgatgac
acaaaacgctcaagaacaaacaaaaaagtggagaagaagaagtgtgtctcagtcatccct
tcacatctcatgaagactgatgtatcaggtcttaagggagaaaccctgatatttgccaac
atgattttctgttttgtcaacattccatcatcttataatctcgaatattttcataaactg
gttgtggaaaatgggggatctttctccatgaatctgaatgactctgttacgcactgcata
gctgcggagaagaaaggtatcaaatatcaggcagctttacggcagggaaggatcattcac
tatgagtggatattagactgttgtgaggaaaaacatcttcttcatttgcaacctaggtat
atactatttcttgctgattttgccaggcacaaatttcctgaagagattgattcatatgct
gactattactactgggacattgaaaatgctgacctcaagcagattttcagtaacatcgac
aaagttgctggtgattcaaacatggttaatcagtacaaaaagaagcattgcatagacgag
agattctgtttcttccagggttgctgtgtctacttgcataatgcacccttagtgaatgcg
gactacaatgtaatatctgatcttgcgctgaagagggtgaagcaggatctaacaatgcat
ggtggtcaagtctgcagcagcattgctccagctactcatttggttgtagtttcggtttta
caggcctataacttcgataacctgtacaagagcttccctcctgctgaaagatgttatcta
catgacaaacgattacatgttgtcagtaataagtggttggaagattcagtggagaaacaa
atgaagctctctgaaactgcttacagccttaaaccagatacactagaagaactagaaatt
gaaaggagtgaggaaaatgttcagcctctggatcataagcttgaggaacacaaggaggtt
gaaagatctcatgccaaaaatgtaccaaggaaaaggagcaggccaaccagtagttcaaga
actgcaagggctgctcctagaccagtccggcgaataaggcctagaagaggaaaccagaaa
gcaaaaataggtgatgatgttgaatctgaagaaagtggccccagtgaatgtcaggatgat
caaaatttggacacagatgatacctctaaggttgaagaaggtattaccgacaaaaagaaa
ggactccctccacctgcttctaaaccagcccggagaacaagggctacaagaggaaatcag
catacaaagatagatgacagcggatccgaagaaagtgggccttgtgaaacagggcaagat
gatcagaggttggacacagattacatctctaagatggaagtagataacagcgataaagac
tgtggaccaccaccaggtgctcagtttttcacattgggggagcaagaggtcaaaggtgtc
aaattgaacaccgtggaggagaaactagacagtcctttccaaagaacaaccgctgctgaa
gccatgagtagtgctccaggtgagaagatagaacaaatggttgatccattgcacgccatg
cttctggatatgctaccactcctgggcaagaaagggacagaagatgcaagtagggcaccc
ttggcgaaagttgagaaggatccacctgcggtaggaagttccacatccaattctgagatt
ctagcgccaaatgctgggacatccggggttccagccccagacccgaatgcagctcctccc
ccaaagaagaaaaaagtgagttacaaagatgtcgctagtgaacttctgaaagattggtga
DBGET
integrated database retrieval system
