Miscanthus floridulus: 136526960
Help
Entry
136526960 CDS
T10264
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
mflo Miscanthus floridulus
Pathway
mflo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136526960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mflo03041
]
136526960
Spliceosome [BR:
mflo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
136526960
Complex C
U5 SnRNP specific factors
136526960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
Septin
Ras
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
136526960
NCBI-ProteinID:
XP_066375632
LinkDB
All DBs
Position
19:complement(83990843..83996484)
Genome browser
AA seq
995 aa
AA seq
DB search
MDDSLYDEFGNYIGPELADSDADDDSDAGGASPSPSESGSPSPAARSPSGSPSRPAALMD
IDDDEGDPSQQAVVLAEDKKYYPTAEEVYGPGVEALVMDEDEQPLEMPIIAPPRVVKFEV
GTRAAATSTYASTDFLLGLAGNPALVRNVTLVGHLQHGKTVFMDMLVEQTHEVDTFDSEG
ERHVRFTDTRVDEQERQVSIKAVPMSLVLEGENGKSYLCNIMDTPGHVNFSDEMTAALRL
ADGAVLVVDAAEGVMVNTERAIRHAIQERLPIVVVINKVDRLITELKLPPNDAYFKLRHT
LEAINDLISSCSTTVGGTQLVDPAAGNVCFASGAAGWSFTLQSFAHLYLKIHGIQFDHEK
FASRLWGDLYFHPDSRTFKKKPPKEGANRSFVEFILEPLYKIYSLVVGEQKGNVESKLAE
LGVTLSNAAYKLNVRPLLRLACRSIFGTATGFTDMLVKHIPSVKDAAARKIDHIYTGPQD
SSIVDAMKKCDPNGPLMVNVTKLYPKSDCSVFDAFGRVYSGTIQTGQTVRVLGEGYSPDD
EEDMTVKEVTKLWVYQARYRVAISKAPAGSWVLIEGVDASIMKTATICPMNIDEDVYIFR
PLRFNTLPVVKIAAEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLD
SIMKDLRELYSEVEVKVADPVVTFCETVVDTSSMKCFAETPNKRNKITMLAEPLEKGLAE
DIENGLVSLDSRQKEITDFFRQRYQWDVLAARSIWAFGPDKQGPNILLDDTLSIEVDKNL
LNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKILNANIAPEPLHRGGGQIIPTARRVVYS
AFLMANPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPKPGTPIYIVKAFLPVI
ESFGFETDLRYHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTR
RRKGMSEDVSINKFFDEAMMNELAQQAADIHLQMM
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atggacgacagcctctacgacgagttcggcaactacataggcccagagctcgccgactcc
gacgccgatgacgactccgacgccggcggcgcctcaccgtccccctccgagtccggctcg
ccgtcccccgcggcacgctccccgtcgggctccccctcccgcccggccgcgctcatggac
atcgacgacgacgagggcgacccgtcccagcaggccgtggtgctcgccgaggacaagaag
tactaccccaccgccgaggaggtgtacgggcctggcgtggaggcgctcgtcatggacgag
gacgagcagccgctcgagatgcccattatcgcgccgccccgcgtcgtgaagttcgaggtc
gggacccgcgccgcggccacgtctacctacgcgtccaccgacttcctcctcggcctcgcg
ggcaaccccgcgctcgtccgcaacgtcaccctcgtcggccacctccagcacgggaagacg
gtgttcatggacatgctcgtagagcagacacacgaagtggacaccttcgactctgagggg
gagcgccatgtgcggttcactgacacaagggtggacgagcaggagaggcaggtctccatc
aaggctgtgccaatgtcgcttgttctcgagggggaaaacggcaagtcatacctgtgcaat
atcatggacacgcccgggcatgtcaacttctcagatgagatgactgcggcactgcggctt
gcggatggggctgtgctcgttgttgatgctgctgagggagtaatggttaatactgagagg
gcaattcgtcatgcaatccaagaaaggcttccaatcgttgttgtgattaacaaggttgac
agattgataacagaactaaagctgcccccaaatgatgcatatttcaagctgcggcatact
ctagaggcaattaatgatcttatctcatcgtgttcaactacagtaggtggcactcagctg
gtggatcctgctgctggaaatgtatgttttgcaagtggtgctgctggctggtcttttacc
ttacaatcttttgcccatctttacttaaagattcatgggattcaatttgaccatgagaaa
tttgcatctcgcctatggggagacctgtattttcaccctgattctagaacctttaaaaag
aagccgccaaaggaaggagctaacagatcatttgttgagtttatccttgagcctctgtac
aaaatttatagtctggttgttggtgagcaaaaggggaatgtggaatcaaagcttgctgaa
ttgggtgtcacgctgagcaatgcagcttataagcttaatgttagacctttgctgaggtta
gcttgccgctcaatttttggcactgctactggttttaccgacatgttagtgaaacatatc
ccctcagtgaaggatgctgctgcaaggaagatagaccacatatacactggaccacaagat
tcctctattgtggatgctatgaaaaaatgtgatcccaatggaccccttatggttaacgta
acaaaactatatccaaagtctgattgcagcgtctttgatgccttcggacgagtttatagt
ggcacgatacagactggacagactgtgagggtccttggagaaggctattctccagatgat
gaagaggatatgactgtcaaagaggtgaccaaattgtgggtttatcaggcacgataccgt
gttgcaattagtaaagcccctgctggctcttgggttcttattgaaggtgtagatgcatca
ataatgaaaactgctactatatgtcctatgaatattgatgaagatgtgtacatatttaga
cctctacgtttcaacaccttgcctgttgtaaagatagcagctgagcctctcaacccaagt
gagcttcctaaaatggtcgaaggtcttcgtaaaattagcaagagttatcctcttgctatt
accaaggttgaagagtctggagagcacactatcctggggactggtgaactatatctggat
tccataatgaaggacctcagagagctttattcagaggttgaggtgaaggtagcagatcct
gttgttacattttgtgaaacagttgttgatacttcttctatgaaatgttttgctgaaaca
cctaacaagaggaacaaaattactatgcttgctgaaccattagagaagggcttagcagaa
gatattgagaatggtcttgttagcctggattcaagacagaaagaaattactgacttcttt
cgccaacgctaccagtgggatgtgcttgcagcaaggtcaatatgggcttttggacctgac
aagcagggtcctaacattcttctggatgacacactttcaattgaggttgacaagaacctg
ctcaatgcggtcaaagattcaattgttcaagggttccagtggggtgctagagaaggtcct
ttgtgtgatgaaccaattaggaatgtgaaattcaagatcttaaatgcaaacatagctcca
gaaccattgcaccgtggtggtggtcagataattcccacagcacgtcgtgttgtctactct
gcattccttatggctaatcctcgccttatggaacctgtgtattatgttgagatccaaaca
ccaattgactgtgtctctgcaatttatacggtgctatcccggcggcgtggtcacgtaaca
gctgatgtacccaagccaggcactccaatatacattgttaaggcatttttacctgttata
gagtcttttggatttgagacagatctcagataccatacccagggacaagccttttgtctg
tcagtattcgatcactgggctattgttcctggtgaccccttagataagagtattgtcctt
cgccccctggagccagcacctatacagcaccttgcccgtgagttcatggtaaagaccagg
cgaaggaagggcatgagtgaagatgtgagcatcaataaattcttcgacgaggccatgatg
aatgagctggctcaacaggctgctgatatccacttgcaaatgatgtag
DBGET
integrated database retrieval system
