Miscanthus floridulus: 136546014
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Entry
136546014 CDS
T10264
Name
(RefSeq) ABC transporter I family member 20-like
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
mflo Miscanthus floridulus
Pathway
mflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136546014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136546014
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
136546014
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
Arf
AAA_29
ORC-CDC6-like
nSTAND3
ATP-synt_ab
AAA_23
AAA_28
AAA_15
AAA_24
Motif
Other DBs
NCBI-GeneID:
136546014
NCBI-ProteinID:
XP_066394091
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All DBs
Position
1:complement(162079318..162082915)
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AA seq
323 aa
AA seq
DB search
MAPTVEISHLSFTYPGIDGRPPPGAPPLIEDVCFSLDAGQRCLLLGSNGAGKTTILKILG
GKHMVDPSMVRVLGRSAFHDTALTSSGDLCYLGGEWRRDVAFAGYQVNIQMDISAEKMIF
GVAGVDPKRRDELIKILDIDLAWRMHKVSDGQRRRVQICMGLLKAFKVLLLDEITVDLDV
LARSNLLTYLKKECEERGATIIYATHIFDGLDDWPTHIVYIAHGKLQLALPLEKVKEMSQ
LSLMRTVESWLRKERDEDRRRRKERKEKGLPQFDKVVEGSRVIGDPAKNAARVVNNGWAA
GRLTSTIAGEENFVFSSNSILRQ
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atggcgccaacggttgagatcagccacctctccttcacctacccgggcatcgacggccgc
ccgccacccggcgcgccgccgctcatcgaggacgtctgcttctccctcgacgccggccaa
cgatgcctcctcctcggctccaacggcgcaggcaagacgacgatactgaagatattaggt
gggaagcacatggtggatccgagcatggtgcgggtcctgggaaggtccgccttccacgac
acggcgctcacctcctccggcgacctctgctatctcggtggtgagtggagacgcgacgtg
gcctttgctggctaccaggtgaacattcagatggatatatcggcagagaagatgattttt
ggtgttgctggtgttgatccaaagagaagagatgagcttatcaagattttagacatcgac
cttgcctggcgcatgcacaaggtatcagatggtcagaggagacgtgtccagatttgcatg
ggacttcttaaggcattcaaggttctcctcctcgatgagatcacagttgaccttgatgtt
ctggcaagatcaaatctgttaacatatcttaaaaaggaatgtgaggaaagaggtgcaaca
atcatctatgccacacatatttttgatggtcttgatgattggccaacacacattgtttac
attgctcatgggaagctgcaattagcactgcctttggaaaaggtgaaagaaatgagccag
ttatctctcatgagaactgtggagagctggttgaggaaagaaagagatgaggacaggagg
aggagaaaggagcgaaaggagaaaggcctcccccaattcgacaaggttgtcgagggtagt
cgggttataggtgatccagcaaagaatgcagccagagttgtaaacaacgggtgggcagca
ggacggctcacctcaacgatcgcaggagaggagaattttgttttcagctctaacagcatt
cttaggcaatga
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