Mycolicibacterium fluoranthenivorans: HZU40_15335
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Entry
HZU40_15335 CDS
T11067
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mflu Mycolicibacterium fluoranthenivorans
Pathway
mflu03030
DNA replication
mflu03410
Base excision repair
mflu03420
Nucleotide excision repair
mflu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mflu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HZU40_15335 (ligA)
03410 Base excision repair
HZU40_15335 (ligA)
03420 Nucleotide excision repair
HZU40_15335 (ligA)
03430 Mismatch repair
HZU40_15335 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mflu03032
]
HZU40_15335 (ligA)
03400 DNA repair and recombination proteins [BR:
mflu03400
]
HZU40_15335 (ligA)
Enzymes [BR:
mflu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HZU40_15335 (ligA)
DNA replication proteins [BR:
mflu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HZU40_15335 (ligA)
DNA repair and recombination proteins [BR:
mflu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HZU40_15335 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HZU40_15335 (ligA)
MMR (mismatch excision repair)
DNA ligase
HZU40_15335 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HZU40_15335 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
Dsc3_N
Auto_anti-p27
HHH_3
BRCT_2
SnoaL_2
Motif
Other DBs
NCBI-ProteinID:
QNJ95467
UniProt:
A0A7G8PMA1
LinkDB
All DBs
Position
3056008..3058068
Genome browser
AA seq
686 aa
AA seq
DB search
MSSSDSEVRGRWQELAEEVRGHQFRYYVKDAPIVSDAEFDTLLRELEALEEAHPELRTPD
SPTQLVGGAGFATDFASADHLERMLSLDNVFDSDELSAWAARISAETGENTEYLCELKID
GVALALVYRDGRLVRAATRGDGRTGEDVTLNARTIEDIPERLTDSEEFPLPAVLEVRGEV
FFRLTDFEDLNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRRLRMICHGLGLVEGTT
FASLHDAYRALGQWGLPVSTHTTRVQGIAAVAERISYWGEHRHDVEHEIDGVVVKVDQVA
LQRRLGATSRAPRWAVAYKYPPEEVTTKLLDIRVNVGRTGRVTPFAYMEPVKVAGSTVGL
ATLHNASEVKRKGVLIGDTVVIRKAGDVIPEVLAPVVDLRDGTEREFVMPTTCPECGTPL
APAKEGDADIRCPNTRSCPAQLRERVFHVAGRGAFDIEGLGYEAAVALLAAGVIDDEGDL
FTLTADDLLRTDLFTTKAGELSANGKRLLANLGKAKSQPLWRVLVALSIRHVGPTAARAL
AGEFGSLDAVMAASEEQLAAVEGVGPTIAAAVIEWFTVDWHRAIVDKWRAAGVRMADERD
AGIERTLEGLSIVVTGSLTGFSRDEAKEAILVRGGKAAGSVSKKTAYVVAGDAPGSKYDK
AIELGVPVLDEDGFRALLENGPAPAD
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
gtgagctcttccgactctgaggtacgcggccgttggcaggaactggccgaggaggtgcgg
gggcatcagttccggtactacgtcaaagacgcgcccatcgtctccgacgccgagttcgac
acgctgctgcgtgaactggaggccctggaggaggcgcatccggagttgcgcacccccgac
tcgccgacccagttggtcggcggtgccggcttcgccaccgacttcgcctccgccgaccat
ctggaacggatgttgtcgctggacaacgtgttcgacagcgacgaactgtcggcatgggcc
gcccggatcagcgccgagaccggtgagaacaccgagtatctctgcgaactgaagatcgac
ggtgtcgcgctggcgctggtctaccgcgacggcagactggtgcgtgcggccacccggggt
gacggccgcaccggtgaagacgtcaccctcaacgcacgcaccatcgaggacatccccgaa
cggctcaccgactccgaggagttcccgctgcccgcggtcctcgaggtgcgcggtgaggtg
ttcttccggctcaccgatttcgaggacctcaatgccggattggtggccgagggcaagccg
ccgttcgccaacccgcgaaacagcgccgccgggtcgttgcgccagaagaacccggccgtc
accgcccggcgccgcctgcggatgatctgccacgggctgggcctcgtggaaggtacgacg
ttcgcctccttgcacgacgcctaccgcgcgctcggtcagtgggggctgcccgtctcgacg
cacaccacccgcgtgcagggcatcgccgcggtcgccgagcggatctcctactggggtgag
caccggcatgacgtcgaacacgaaatcgacggcgtggtggtcaaagtcgaccaggtggcg
ttgcaacgccggctcggtgcgacatcgcgcgcaccgcgctgggcggtggcctacaagtat
ccgcccgaagaggtcaccaccaagctgctcgacatcagggtcaatgtcggccgcaccggc
cgggtcaccccgttcgcctacatggagccggtcaaggtcgcgggatccaccgtcggattg
gccaccctgcacaacgcctccgaggtgaaacgcaagggcgtgctgatcggggacaccgtg
gtgatccgcaaggccggtgacgtcatccccgaggtgctggcgccggtggtcgatctgcgc
gacggtaccgaacgcgaattcgtcatgcccacaacatgtcccgagtgcggcacccccctg
gcgccggccaaggagggcgatgccgacatccgctgccccaacacgcgcagttgcccggcc
cagttgcgcgagcgcgtgttccacgtcgcgggccgcggtgccttcgatatcgaagggctc
gggtacgaagcggcggtggcgctgttggctgccggcgtgatcgatgacgagggcgacctg
ttcaccctgacggccgacgatctgttgcgcaccgatctgttcaccaccaaggccggcgaa
ctgtccgccaacggtaagcggctgctggccaatctgggcaaggccaaatcccagccgctg
tggcgcgtgctggtggcgctgtccatccgccacgtggggccgacggcggcgcgcgcgctg
gccggtgagttcggcagcctcgacgcggtgatggcggcgtccgaggagcagctcgccgcg
gtcgagggtgtcggtccgaccatcgccgccgccgtgatcgagtggttcaccgtggactgg
caccgggccatcgtcgacaagtggcgcgccgcaggggtgcggatggccgatgaacgcgac
gcgggcatcgaacggaccctggaaggcctgtccatcgtcgtcaccgggtcgctgaccggg
ttctcgcgcgatgaggccaaggaggccatcctggtgcgtggcggcaaggcggccggctcg
gtgtcgaagaagacggcctacgtggtggccggggacgccccggggtccaagtacgacaag
gccatcgaactcggggtgccggtcctcgacgaggacggctttcgcgcactgctggagaac
ggtccggcgccggcggactaa
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