Marinomonas foliarum: JSY38_14410
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Entry
JSY38_14410 CDS
T07165
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mfoi
Marinomonas foliarum
Pathway
mfoi03030
DNA replication
mfoi03410
Base excision repair
mfoi03420
Nucleotide excision repair
mfoi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mfoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JSY38_14410 (ligA)
03410 Base excision repair
JSY38_14410 (ligA)
03420 Nucleotide excision repair
JSY38_14410 (ligA)
03430 Mismatch repair
JSY38_14410 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mfoi03032
]
JSY38_14410 (ligA)
03400 DNA repair and recombination proteins [BR:
mfoi03400
]
JSY38_14410 (ligA)
Enzymes [BR:
mfoi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JSY38_14410 (ligA)
DNA replication proteins [BR:
mfoi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JSY38_14410 (ligA)
DNA repair and recombination proteins [BR:
mfoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JSY38_14410 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JSY38_14410 (ligA)
MMR (mismatch excision repair)
DNA ligase
JSY38_14410 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JSY38_14410 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DZR_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QRV23243
UniProt:
A0ABX7INQ8
LinkDB
All DBs
Position
3098766..3100784
Genome browser
AA seq
672 aa
AA seq
DB search
MTHQQMLDLIQQLNDYSYAYHVKDAPIVPDAEYDRIYRQLQEVETAHPDWIQADSPTQRV
GEKPDSGFNNVAHTVPMLSLDNAFDNDSLSDFDQRIRKLLNADHVTYCCEPKLDGLAISL
RYEDGHLVRGVTRGDGLSGEDITSNIKTIYSVPMKLRTNTPPAVLEVRGEIYMPKDGFEK
LNAVAVEQGEKTFVNPRNAAAGSLRQLDPKITAKRPLVMCAYSIGYAEGWDQPTSHYEGL
LQLSEWGFRTNDLMAKAKGAQGCIEYYEMLNEKRADLSYDIDGIVYKVDQIALQSQLGFI
ARAPRWAIARKFPAQEEMTRVLGVDFQVGRTGAITPVARLEPVFVGGVTVSNATLHNKDE
IARLGVKVNDFVIVHRAGDVIPKVVQVVIDKRTDDVTDVIFPEACPVCGSDLEQVEGEAV
IRCTGGLVCGAQLKESLKHFVSRKAMDIDGLGDKLIEQLVDQELVKTPVDIFTLSEKKDT
LLSMERMGQKSVEKLLASIEAAKNTQFNRFIYSLGIREVGEATARALTSYFTELDDLMVA
DQESLVEVEDVGPIVAQHVCLFFEQELNRETIKGLLAAGVVWEKKQQVSADELPLSGKTY
VVTGSLSQFSRDQVKDKLQALGAKVSGSVSAKTDCLVAGEKAGSKLTKAQSLDVPIIDEE
GVIALLTQHGAI
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgacgcatcagcaaatgctggacctgattcagcagcttaacgactacagctatgcctac
catgtaaaagatgcgccaatcgtacctgacgcagaatatgaccgcatatatcgtcagctt
caagaggtagaaaccgcacacccagactggattcaagccgattcaccaactcaacgtgtt
ggcgaaaagccagacagcggttttaacaacgtggctcatactgtgcctatgttgtcttta
gacaatgcctttgataatgactccttgtctgattttgatcagcgtattcgtaaattactt
aatgctgatcatgtaacctattgctgtgaacctaaactggatggtttggcgattagtttg
cgttatgaagatggacatttagttcgaggcgtgacccgtggtgatggtttgtctggggaa
gatatcacttcgaatataaagactatttactctgtgccaatgaagttacgcactaatacg
ccacctgcagtattagaagttcgtggcgaaatctacatgccaaaagacggttttgaaaag
ctgaatgcagtggcggttgagcaaggtgaaaaaacttttgttaatcctcggaatgcggcg
gcgggcagcttacgtcagcttgatccaaaaataacggccaaacgcccacttgttatgtgt
gcttattcgattggctatgccgaaggttgggatcaaccgacaagtcattatgaaggtttg
ctgcagttaagtgagtggggctttcgtaccaatgacctaatggcaaaagctaagggcgcg
caaggctgcattgagtattacgaaatgctcaatgaaaaacgtgcagatttatcctatgac
atagacggtattgtttataaagtggatcaaattgccttgcagagtcagctgggctttatt
gctcgagcaccacgttgggcgatagccaggaaattccctgcgcaagaagagatgaccaga
gtgttgggtgttgatttccaagtgggtcgtactggcgctattacgcctgttgctagatta
gagcctgtgtttgtcggtggtgtaacagtctctaatgccactttgcacaacaaagatgag
attgctcgcttgggcgtaaaggtgaatgattttgtaattgttcaccgcgctggggatgtt
attcctaaagtggttcaggttgtcattgataagcgtactgatgatgtgacggatgttatt
tttccagaagcttgtccagtttgtggttcggatttggaacaggttgaaggcgaagcggtt
attcgttgtactggcggtttggtttgtggagcgcagttaaaagaatccttaaagcacttc
gtctctcgtaaagctatggacatagacggtctcggtgacaaattgattgagcaattggtc
gatcaagagttggtgaaaacccctgttgatatttttaccttgagtgagaaaaaagacacc
ttattgtctatggaacgaatggggcaaaagtcagttgagaagcttcttgcttcaatcgag
gcggcaaagaatacgcaatttaatcgctttatctattcgctaggtattcgtgaagtgggt
gaggccacggcgcgagcattaaccagttactttactgagctggatgatttgatggtggcg
gatcaagaaagtttggtggaagtcgaagatgtaggccctattgttgctcaacatgtatgt
ttgttttttgaacaagaattaaaccgagaaacgattaagggtttgttagcggctggggtt
gtttgggaaaaaaaacagcaagtctctgcggatgaattaccactgtccggtaaaacctac
gttgtgactggttctttgagtcagtttagccgtgatcaggttaaagacaaactgcaagcg
ttgggcgcaaaagtaagtggttctgtctccgcgaaaacagattgcttagtggctggtgaa
aaagcgggctctaaacttaccaaagcacagtctcttgatgtgcctattattgatgaggag
ggcgttattgccttgctcactcaacatggagcgatctaa
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