Marvinbryantia formatexigens: NQ534_20350
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Entry
NQ534_20350 CDS
T08439
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mfor
Marvinbryantia formatexigens
Pathway
mfor03030
DNA replication
mfor03410
Base excision repair
mfor03420
Nucleotide excision repair
mfor03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mfor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NQ534_20350 (ligA)
03410 Base excision repair
NQ534_20350 (ligA)
03420 Nucleotide excision repair
NQ534_20350 (ligA)
03430 Mismatch repair
NQ534_20350 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mfor03032
]
NQ534_20350 (ligA)
03400 DNA repair and recombination proteins [BR:
mfor03400
]
NQ534_20350 (ligA)
Enzymes [BR:
mfor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NQ534_20350 (ligA)
DNA replication proteins [BR:
mfor03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NQ534_20350 (ligA)
DNA repair and recombination proteins [BR:
mfor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NQ534_20350 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NQ534_20350 (ligA)
MMR (mismatch excision repair)
DNA ligase
NQ534_20350 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NQ534_20350 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
RNA_ligase
BRCT_2
DNA_ligase_A_M
5_3_exonuc
RUBY_RBDX
MTR4_beta-barrel
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
UWO24733
LinkDB
All DBs
Position
complement(4353099..4355111)
Genome browser
AA seq
670 aa
AA seq
DB search
METIQQKIEELRKTLEYHSDRYYNQDNPEISDYEYDQMMLELKSLEKEHPELITPESPTQ
HVGGTAKREAGVLVKHRVPMLSLADVFSREEVDAFVQDMQAQFGNPEFVVETKIDGLSMA
LRYTDGVLTTAITRGDGIIQGEDVTENARVIKDVKTRLKHPIPYLEIRGEVYMTDAAFEK
VNEKQELLGKKLFANPRNCAAGTLRQLDSRITKERELSLFVFNIQETQGREFTTHTEGYE
YLKSNGIRVIDHYKVCRTADEVWNAIEEIGSMRGELGYDIDGAVVKLNSLAQRAIVGATS
KVPRWAVAYKYPPEEKESVLLDIELSVGRTGRITPTAVFEPVRLCGTSVSRATLHNQDFI
DDLDICIGDTIVVYKSGEIIPKIRAVKKEKRPQGAKRFRIPDVCPVCGAPAVREKDTADI
RCTGSNCPAQLERHIINFVGRDAMDIKGFGANYIIELVRLGYLKNVADIFSLKEHREELI
EQGIIGKEKNTDKLLKAIEDAKANQPDRLLTGLGIQGVGKATARSLMSHFGTIEKLAGAS
QEELESVSDIGSISAEAIRSYFAEPDNRRLLEKLRDAGVNMEAEQEEAGTVFAGKTFVVT
GTLPTMGRSEAVSLIQKLGGKAAGSVSKKTSYVLAGENAGSKLTKAQQLGIPVIDEAEFL
EMAAAENQGK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
gtggaaacgatacagcaaaaaatagaagaattgagaaagacgctggaatatcacagcgac
cgttattacaaccaggacaatccggaaatttcggattatgaatacgaccagatgatgctg
gagctgaaaagcctggaaaaggagcatccggagctgatcacgccggaatcgcccacacag
catgtcggagggacggcaaagcgcgaggcgggggtactggtaaagcaccgcgtgccgatg
ctgagtctggcggatgtattttcgcgtgaggaagtggacgctttcgtgcaggatatgcag
gcgcagttcggcaatccggaatttgtagtcgagacaaaaatcgacgggctttcgatggcg
ctgcgctatacggacggcgtgctgacgaccgcgatcacgcgcggagacggcattatccag
ggagaggatgttacggaaaacgccagggtgattaaagacgtgaaaacgcgtctgaagcat
ccgattccctatctggaaatccgcggcgaggtctatatgaccgatgcggcatttgagaag
gtaaacgaaaagcaggagctgcttgggaaaaagctgttcgccaatcccagaaactgtgcg
gcgggaacgctgcgccagctcgacagccgcatcacaaaggagcgggagctgtcgctgttc
gtttttaatatacaggaaacgcagggacgggaatttaccacgcatacggaaggctatgag
tatttaaaaagcaacggcatccgcgtgatagaccactataaggtctgccgcacggcggac
gaggtgtggaacgccatagaagagatcggcagtatgcgcggcgagctcggctacgatatc
gacggggcggtggtaaagctcaacagccttgcccagagagccattgtcggggcgacctcc
aaggtgccgcgctgggcggtggcatataaatatccgccggaggaaaaggaaagcgtgctg
ctggacattgagctttctgttggaagaaccgggcggataacgccgacagccgtctttgag
ccggtgcgtctgtgcgggacaagcgtctcccgcgcaacgctgcataaccaggatttcatt
gatgatctggatatctgcatcggcgatacgattgtcgtttataaatcgggcgagattatc
ccgaaaatccgggcggtaaagaaagaaaaacgcccgcagggagcaaagcgcttccgcatt
ccggatgtctgtccggtctgcggcgcaccggcggtgcgtgagaaggacacggcggatatc
agatgtaccggcagcaactgtccggcgcagctcgaacggcacatcatcaattttgtcggg
cgggacgcgatggacatcaagggattcggtgcaaattatatcatagaactggtacggctg
gggtacctgaaaaatgtcgctgatatcttttccttaaaggaacaccgggaagagctgatt
gagcagggaattatcggcaaggagaaaaataccgacaaactcctgaaggcgatcgaggac
gcgaaggcaaaccagccggaccgcctgctgaccgggcttggcatccagggcgtcgggaag
gcgacagcacggtcgctgatgagccacttcggaaccatagaaaagctggccggggcgtcg
caggaagagctggagagcgtctccgatatcggaagcatcagcgcggaggcaatccgcagc
tactttgcggagccggataaccgcaggctgctggaaaagctgcgggacgctggcgtcaac
atggaggcggagcaggaggaagcgggcactgttttcgcaggcaaaaccttcgtggtgacg
ggaacgctgccgacgatgggcagaagcgaggcggtcagcctcattcagaagcttggcgga
aaggcggcggggtccgtatcgaagaaaaccagctatgtactggcaggagaaaatgcagga
agcaagttgacaaaagcacagcagcttggtattccggtaattgatgaagcagaatttctg
gaaatggcggctgcggaaaatcaggggaaatag
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integrated database retrieval system
