Alexandromys fortis (reed vole): 126498322
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Entry
126498322 CDS
T08493
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
mfot
Alexandromys fortis (reed vole)
Pathway
mfot03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mfot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
126498322
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mfot03400
]
126498322
Enzymes [BR:
mfot01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
126498322
DNA repair and recombination proteins [BR:
mfot03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
126498322
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
RNA_ligase
BRCT_2
mRNA_cap_enzyme
HTH_Tnp_Tc3_2_like
GatB_Yqey
ATG17_like
Motif
Other DBs
NCBI-GeneID:
126498322
NCBI-ProteinID:
XP_049992820
LinkDB
All DBs
Position
Unknown
AA seq
911 aa
AA seq
DB search
MATSQSSQTVAAHVPFADLCSTLERIHKSKDRAEKIRHFKEFLDSWRKFHDALHKNKKDI
PDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPREGKDALKLLNYRTPSGART
DAGEFAMIAYFVLKPRCLQKGSLTIQQVNELLDLVASNNSGKRKDLVKKSLLQLISQSSA
LEQKWLIRMIIKDLKLGISQQTILNVFHNDAVELHNVTTDLQKVCQQLHDPSVGLSDISI
SLFSAFKPMLAAVADVERVEKDMKQQSFYIETKLDGERMQMHKDGEVYQYFSRNGYDYTD
QFGASPQEGSLTPFIHDAFRTDVQECILDGEMMAYNPTTQTFMQKGVKFDIKRMVEDSDL
QTCYCVFDVLMVNNKKLGRETLRKRYEILSSTLTPIQGRIEIVQKKLAHTKNEVVDALNE
AIDNREEGIMVKHPLSIYKPDKRGEGWLKIKPEYVTGLMDELDLLIVGGYWGKGSRGGMM
SHFLCAVAEAPPHGERPSVFHTLCRVGSGYTMKELYDLGLKLAKHWKPYHKKSPPSSILC
GTEKPEVYIEPHHSVIVQIKAAEIVPSDMYKTGTTLRFPRIEKIRDDKGWHECMTLGDLE
ELRGRASGKLATKHLHIGDDDEPREKRRKPVSKVKKTIGIIEHLKAPNLSNVSKVSNVFE
DVEFCVMTGMEGFPKPDLENRIAELGGCVVQNPGPETYCVIAGCRNIRVRNIISSDEHDV
VKPEWLLECFKTKTCVPWQPRVMVHMCPSTKQHFAREYDCYGDSYFVDTDLDQLKEVFSG
IKPREQQTPEEMAPVIADLEYRYSWDRSPLSMFRHCTVYLDLYAVVNDLSSRIEATRLGV
TALELRFHGARVVSCLSEGVSHVIVGEDPSRVADFKAFRRTLKKKFKILQEHWVTDSVDK
CELQDESRYLL
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggctacctcacagtcttcacaaaccgtcgcagctcatgtcccctttgcagatttatgt
tccacattggagcggatacataaaagtaaagaccgtgcagagaagatcaggcacttcaag
gaatttttagactcttggaggaaatttcacgatgcccttcataagaacaagaaggacatt
ccggactccttttacccagccatgagacttattctccctcagttagagagagagaggatg
gcttatggtatcaaagaaaccatgcttgccaagctttacatcgagttactgaacttacca
agggaaggcaaggacgccctgaagctcctcaattatcgaacaccgagtggcgctcgcacg
gatgctggggaatttgcgatgattgcgtacttcgtgttgaagccgcggtgcttacagaaa
ggaagcttaaccatacagcaggtgaatgaactcttggacttagtcgccagcaacaattct
ggcaaaagaaaagacctagtgaagaagagccttctccagttgatatcgcagagttcagcc
ctggaacaaaagtggctgatccgcatgatcattaaagacttaaagctgggcatcagtcag
caaacgatacttaatgtctttcataacgacgcagttgagttgcacaacgtcaccacggat
ctgcagaaggtgtgccagcaactccatgacccctccgtagggctcagtgatatctctatc
agcctcttttctgcctttaagcctatgctagccgccgtagccgacgtggagcgcgtggaa
aaggacatgaagcagcagagtttctacatcgagaccaagctggacggcgaacgcatgcag
atgcacaaagacggggaggtgtatcagtacttctccaggaacggctatgactacaccgat
cagtttggcgcgtccccccaggaaggctccctcacccccttcatccacgacgccttccgg
acagatgtgcaagagtgcatcctcgacggcgagatgatggcctacaacccaaccacgcag
acgttcatgcagaagggggtcaagtttgacatcaaaaggatggtggaggattccgacctg
cagacgtgttactgcgtcttcgacgtgttgatggttaataataagaagctagggcgtgag
accctgaggaagagatatgagatccttagcagtactttgacacccatccagggtcgaata
gagatcgtgcagaaaaagctcgctcacacgaagaatgaggtggtggatgccttaaatgaa
gccattgataacagagaggagggcatcatggttaagcaccctctgtcaatttacaagccc
gacaaaagaggggaagggtggctgaaaattaaaccagagtatgtcactggattaatggac
gaattagacctcttaattgtggggggctactggggtaaaggttctcgcggcggcatgatg
tctcactttttgtgtgcggtggcagaggcgccgcctcacggtgagaggccatctgtgttc
catactctgtgccgtgttgggtcaggatacaccatgaaggagctctatgaccttggcctg
aaattggccaaacattggaagccttaccataagaaatccccaccgagcagcattttatgc
ggcacagagaagccggaagtgtacatcgagccccatcactccgtgattgtccagatcaag
gcggcagagatcgtccccagtgacatgtacaagactgggaccacgctgcgcttcccacgc
atcgagaagatcagagatgacaaggggtggcatgagtgtatgaccctgggtgacctggaa
gagctgagggggagagcatccgggaagcttgccacaaagcaccttcacatcggcgacgat
gatgaacctagagaaaagaggcggaaacccgtctccaaagtgaagaagaccatcggaatt
atcgaacacttgaaagcacctaacctctctaacgtaagcaaggtttctaacgtatttgag
gacgttgagttttgcgttatgactgggatggagggttttcccaagcctgacctggagaac
agaattgcagaacttggtggctgcgttgtgcagaatccaggcccagaaacgtactgtgtg
attgcagggtgcaggaacatcagagtgaggaacattatctcctcggacgaacacgatgtc
gtcaagcccgagtggctgctggagtgttttaaaacaaaaacgtgtgtgccgtggcagcct
cgcgtcatggttcacatgtgcccgtcaacaaagcagcactttgcccgcgaatatgattgc
tatggagatagctattttgttgatacggatttggatcaactgaaagaagtgttttcagga
attaaacccagggagcagcagactcctgaagaaatggcccccgtgatcgccgacctagaa
taccgctattcctgggatcgctctcctctcagtatgtttcggcactgcaccgtgtatctg
gacttgtatgctgttgtcaacgacttgagctccagaatcgaagcaacgagattaggtgtg
acagcgctcgagctgcggtttcatggagccagggtagtgtcctgcttatctgagggggtg
tctcatgtgatcgttggggaagatcctagccgagttgcagacttcaaagctttcaggagg
actcttaagaaaaagtttaaaatcctgcaagaacattgggtgactgattcagtagacaag
tgtgagcttcaggatgaaagtcggtatttgctctag
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