Alexandromys fortis (reed vole): 126499309
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Entry
126499309 CDS
T08493
Name
(RefSeq) short transient receptor potential channel 3 isoform X1
KO
K04966
transient receptor potential cation channel subfamily C member 3
Organism
mfot
Alexandromys fortis (reed vole)
Pathway
mfot04360
Axon guidance
mfot05017
Spinocerebellar ataxia
mfot05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
mfot00001
]
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
126499309
09160 Human Diseases
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
126499309
05022 Pathways of neurodegeneration - multiple diseases
126499309
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
mfot04040
]
126499309
Ion channels [BR:
mfot04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
126499309
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRP_2
Ion_trans
PKD_channel
Ank_2
Ank
Ank_4
Ank_5
MFS_4
Motif
Other DBs
NCBI-GeneID:
126499309
NCBI-ProteinID:
XP_049994427
LinkDB
All DBs
Position
Unknown
AA seq
920 aa
AA seq
DB search
MSTKVRKCREPARVTLPAPEEEEDGEAEGAESQRRRRGWRGVNGGLEPPCQRAPPSPGPD
ASSEGSPSRWRTAGMRDKGRRQAVRGPAFMFGSRGPSLTAEEERFLDAAEYGNIPVVRKM
LEESQTLNVNCVDYMGQNALQLAVGNEHLEVTELLLKKENLARIGDALLLAISKGYVRIV
EAILGHPGFAASRRLTLSPCEQELRDDDFYAYDEDGTRFSPDITPIILAAHCHKYEVVHL
LLLKGARIERPHDYFCRCADCAEKQRLDAFSHSRSRINAYKGLASPAYLSLSSEDPVLTA
LELSNELAKLANIEKEFKNDYRKLSMQCKDFVVGVLDLCRDSEEVEAILNGDLESAEPLE
THRHKASLSRVKLAIKYEVKKFVAHPNCQQQLLTIWYENLSGLREQTIAIKCLVVLVVAL
GLPFLAIGYWIAPCSRVLASSSPLCLLGKILRSPFMKFVAHAASFIIFLGLLVFNASDRF
EGISTLPNITVIDYPKQIFRVKTTQFTWTEMLIMVWVLGMMWSECKELWLEGPREYIVQL
WNVLDFGMLSIFIAAFTARFLAFLQATKAQQYVDSHVQESDLSEVTLPPEVQYFTYARDK
WLPSDPQIISEGLYAIAVVLSFSRIAYILPANESFGPLQISLGRTVKDIFKFMVLFIMVF
LAFMIGMFILYSYYLGAKVNPAFTTVEESFKTLFWSIFGLSEVTSVVLKYDHKFIENIGY
VLYGIYNVTMVVVLLNMLIAMINSSYQEIEDDSDVEWKFARSKLWLSYFDDGKTLPPPFS
LVPSPKSFVYFIMRITNLSKCRRRRLQKDLELGMGNSKSRLNLFTQSNSRVFESHSFNSI
LHQPTRYQQIMKRLIKRYVLKAQVDKENDEVNEGELKEIKQDISSLRYELLEDKSQATEE
LAILIHKLSEKLNPSVLRCE
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccaaggtcaggaagtgccgggagcccgcgagggtgaccttgcctgcgccggag
gaggaggaggatggcgaggccgagggagccgagtcgcagcgccgccgccggggctggagg
ggtgtcaacggcgggctggagccgccctgccagcgcgcaccgccatccccggggcccgac
gcgtcctcggagggcagcccgtcgaggtggcgcactgcagggatgcgtgacaagggccgg
cgccaggcggtgcgtggcccggctttcatgtttggttctcgtgggcccagcctcacagcc
gaggaggagcgcttcctggacgctgcagagtacggcaacatcccggtggtgcgcaagatg
ctggaggagtcccaaacgctcaacgtcaactgtgtggactacatgggccagaatgcactg
cagctggctgtcggcaatgagcatctggaggtgactgagctgctgctgaagaaggagaac
ctggcacgtatcggtgatgcgctgttgctagccatcagcaagggctatgtgcgcatcgtg
gaggccatcctgggccacccaggttttgcggccagccggcgcctgacacttagcccttgc
gagcaggaactgcgggacgatgacttctatgcctatgatgaggatggcacacgcttctcg
cctgacatcacgcccatcatcctggctgcacactgccataagtacgaggtggtgcatctg
ctgctgctcaagggcgcgcgcattgagcggccccacgactacttctgtcgctgtgccgac
tgtgccgagaagcagcggcttgatgccttcagccactcgaggtctcggatcaatgcttac
aagggattggccagccctgcatacctgtcgctctccagcgaggacccggtgctcacggcc
ctggaactcagcaatgagctggccaagctagctaacatagagaaggagttcaagaatgac
tacaggaaactctcgatgcaatgcaaagactttgtggtgggcgtgttggacctgtgtcgg
gactcggaagaggtggaggccattctgaacggagatctagagtcagcagagcccctggag
acacacaggcacaaggcttccctgagtcgggtcaaacttgccattaagtacgaagtgaaa
aagttcgtggctcaccccaactgccaacaacagcttctgacaatctggtatgagaatctc
tccggccttcgggaacagaccatcgctatcaagtgcctggtcgtgctggtcgtggccttg
ggccttccgttccttgccattggctattggattgcaccttgtagcagggtactagcctcc
tcctcccctctgtgcttgctggggaaaattcttcgaagccctttcatgaagttcgtagca
cacgccgcctccttcatcatctttctgggtctgcttgtgttcaacgcctcagacaggttt
gaaggcatcagcacgctgcccaatatcactgttattgactaccccaagcagatcttcagg
gtgaagaccacccagttcacatggacggaaatgctaattatggtctgggttctcgggatg
atgtggtctgagtgcaaggagctctggctggaaggaccccgggagtacatcgtgcagctg
tggaacgtgcttgacttcggcatgctctccatcttcatcgccgccttcaccgccaggttc
ctggctttcctgcaggccacgaaagcgcagcagtatgtggacagccacgtgcaggagagc
gacctgagcgaagtcacgcttccgcctgaggttcagtatttcacctatgctagagacaaa
tggctcccttctgaccctcagatcatatccgaaggcctctacgccatagcggtggtactc
agcttctcccggatcgcatacatcctccctgccaacgagagctttgggcccttgcagatc
tccctgggaaggactgtgaaggacatattcaagttcatggttctgttcatcatggtgttt
ctggcgttcatgattggcatgttcatcctttattcctactaccttggggccaaagtcaat
cctgcttttaccactgttgaagaaagtttcaagactttgttttggtccatatttggactg
tctgaagtgacttctgtggtcctcaaatatgatcacaaattcatcgagaatattggatat
gttctttacggaatatacaatgtaaccatggtggttgttttactcaacatgctaattgct
atgattaatagctcataccaagaaatcgaggacgacagcgatgtggagtggaagtttgca
cgctcaaagctttggttatcctattttgacgacgggaagacgctgcctccgcccttcagc
ctggtccctagcccgaaatcctttgtttacttcatcatgcggatcactaacctttccaaa
tgcaggaggagaagactgcagaaggacctggagttgggaatgggtaactccaagtccagg
ttaaacctcttcactcagtctaactcgagagtttttgaatcacacagttttaacagcatt
ctccatcagccaacccgctatcagcagataatgaaaagactcataaaacggtacgttctg
aaagcacaagtagacaaagaaaatgacgaggtgaatgaaggtgaactgaaagaaatcaag
caggatatctccagcctccgttacgaacttctggaagacaagagccaagccacagaagaa
ctagccatcttgattcataaactcagtgagaaactgaaccccagtgtgctgagatgtgaa
tga
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