Alexandromys fortis (reed vole): 126516057
Help
Entry
126516057 CDS
T08493
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
mfot
Alexandromys fortis (reed vole)
Brite
KEGG Orthology (KO) [BR:
mfot00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mfot03036
]
126516057
03400 DNA repair and recombination proteins [BR:
mfot03400
]
126516057
Chromosome and associated proteins [BR:
mfot03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
126516057
DNA repair and recombination proteins [BR:
mfot03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
126516057
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
126516057
NCBI-ProteinID:
XP_050022163
LinkDB
All DBs
Position
Unknown
AA seq
2006 aa
AA seq
DB search
MAATGASDPGGLSAGSETDGGVDGCRTVYLFDRRGKESELGERALQVSNRAGYAEFRAAV
CQTIGISSEEKFVITTTSRKEITRDNFDEAVRDGVTLYLLQSVDQSLLTATKERIDFLPH
YDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSHNVGVRRIQIKLLFDETQGKPAV
AVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGK
QAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPADSVHITN
DDERFLHNLIVEEKKKDSFTAVVITGVQPEHIQYLKNYFHLWTRQLTHIYHYYIHGPKGN
EISTAKEVGPFNNLDIEISLFEKGKTPKIVNLREIHDDMQTLYINTASDSFEFKAHVEGD
GVVEGVIRYHPFLYDKETYPDDPCFPSKLRDEEDDDDCFILEKAARGKRPIFECFWNGRL
IPYTSVEDFDWCAPPKKRGLAPIECFNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNT
LFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGVITRPDLPSKKQGPWATYS
AIEWDGKTYKAGQLVKTVKTLPLFYGSIVRFFLYGDHDGEVYATGGEVQIAMEPQALYDE
IRTVPIAKLDRTVAEKTIKKYVEDEMARLPDRLSITWPEGDELLPNEIRPAGTPIGALRI
EILNKKGEAMQKLPGTSHGGSKKLLVELKVILHTSSGNKEIISHISQHGGKWPYWFKKME
NIQKLGNYTLKLQVVLNESNADTYAGRSLPSKAIKFSIKEGKPEKFSFGLLDSPFRVGVP
FNIPLELQDEFGHTTQLSSDIQPVLEASGLSLHYEEITRGPNCVIQGVVAKGLVNSCQGK
NFNLKVIIPGLKEDSQILKIRLLPGPPHRLKVKPDSEILVIENGTVFPFQVEVVDESDNV
TAQPKLIVHCKFLGAPSLPVYTVDCSSSGTSILTGSAIHVKNIKKDQTLTARIEIPSCKN
VSPVEKTIKLLPSSHVARLQIFSVEGQKAIQVKHQDEVNWVAGDVMQNLIFQMYDEGERE
INITPSLAEKIKVNWTPEVNREHLLQGLLPGVQVPTSVKDVRYCQVSFQDDHVSLESAFT
IRPLPDEPKHLKCELKGGKTVQMGQELQGEIVVMVADQYGNQISAFSPDSLSALSIAGVG
LDNSNLKTTLETKTQSIIVRGIRFVPGPPGHKDLCFTWREFSDFIRVHLISGPPTKLHLI
DWPELKESMPVINGRQLPNPLVVQLCDQWDNPALVSNVKISLIKTSNLKLIPSNQQHKTD
DKGRANLGVFTVFAPRGEHTLQVKGVYNKSSIEGPTIQLMVLPDPEKPVRLNVKYDKDAS
FIAGDIFTDFMVSVISEGGSVIKNINPTRISMKLWKLSSSMSRAPTNAETFSCNKIKDND
KEDGCFYFREKATPSKVGTYCIQFDFMIDKTNTLSSEQVIVDVLPNQPMKLVPDVQPATP
AVSNVRSIASRTLVRDLHLSITDNYGNHTGMDLVGTVVATIKGFNEEDTDTPLFIGKVRT
LEFPFVNGYAEITTLVLAENSPGRDSTEYFIIFEPRLSTLSRTLESYSLPFMFYNDVKKQ
QQMAALTKEKDQLSRSIVMYRSLFDANKQLVDEMKCQVEEAKLKEVQLRNELKACNIDIP
TTQQIPHIEALLEKKIAEQSELKKKPRRSCTLPNYTKRSGDVLGKIAHLAQIEDDRAAVV
ISWHLASDMDCVVTLTTDAARSIYDETQGRQQVLPLDSIYRKTVPDWKRPLPHIRNGKLY
FKPFGNPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRREVVKITHCPTLL
TRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCMVLGKEIDLIQQYRTAVCKLN
TVNKDLSNQLQYLHTPDMKKKKQELDEQEKSLKLIEQKLGMTPAWKCNDSFCHSPKIELT
ECPIPTKRMRRESTRQNRRPKGDVPN
NT seq
6021 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgacgggcgccagcgatcccggaggcctctcggcgggctctgagacggacgga
ggcgtcgacggctgcaggaccgtgtacttgtttgaccggcgcgggaaggagtcggagctc
ggggagcgcgcactgcaggtctccaaccgcgcaggctacgcggagttccgcgctgctgtg
tgtcagacaattggtatttcatctgaagaaaagtttgttattacaactacgagcaggaaa
gaaattacccgtgataattttgatgaagctgttagagacggagtcactctctacctgcta
cagtcagttgaccaatcgctgttaacagcaacaaaagaaagaattgacttcctgcctcac
tatgacactctggttaaaagtggcatgtatgaatattatgcaagtgaaggacagaatcct
ttgccatttgctctcgcagaattaatcgacaattcattgtcagccacttctcacaacgtt
ggtgttagaagaatccagatcaaattgctttttgatgaaactcaaggaaaacctgccgtt
gcagtgatagataatgggagaggaatgacctccaaacaacttaacaactgggctgtgtac
aggttatcaaagtttacaagacaaggtgactttgaaagtgatcattcagggtatgttcgg
ccagtaccagtaccacgcagcttaaacagtgatatttcgtattttggtgttggaggcaaa
caggctgttttctttgttggacagtcagccagaatgataagcaagcctgcagactcccag
gatgttcatgagcttgtgctttctaaagaagactttgagaaaaaggaaaagaataaagag
gcaatatatagtggatacattagaaacagaaagccagctgattctgttcacattacaaat
gatgatgaaagattcctacacaatcttattgtagaggagaaaaagaaagatagctttact
gctgtggttattacaggggtgcaaccagaacacatacagtacttgaaaaattatttccat
ctttggacacggcagttaacgcatatttatcattactatattcatggaccaaaaggcaat
gaaataagtactgctaaagaagttggacctttcaacaatcttgatattgaaatttcttta
tttgaaaaaggaaagacacctaagattgtcaacctaagggaaatacacgatgacatgcag
accctgtatataaacacagcatctgatagttttgagttcaaggctcatgttgaaggagat
ggtgtggtggaaggggttatccggtaccatcccttcttatatgataaagaaacttatcct
gatgatccatgcttcccatcaaaattaagagatgaagaagatgatgatgattgcttcata
cttgagaaagcagcaagagggaaaagacctatttttgagtgcttttggaatggacggtta
ataccatatacatcagttgaagattttgactggtgtgctcctcctaagaagagagggctt
gccccaattgagtgctttaatagaatatctggtgcattgttcactaatgacaaatttcag
gtcagcacaaataaactgacatttatggatcttgagctgaaattgaaagataagaacacc
ctttttacaagaatcttaaatggacaggagcagagaatgaaaattgacagagaatttgct
ttatggctgaaggactgtcatgaaaagtatgacaaacaaataaaatttacactttttaaa
ggagtgattacacgtcctgatcttccctccaaaaagcaaggcccctgggcaacatactca
gcaatagagtgggacgggaaaacatacaaagcggggcaactggtcaagacagtcaagaca
ctgcctctcttttatggaagcatagtaaggttcttcctttatggtgatcatgatggagaa
gtgtacgctacaggaggtgaagttcagatcgcaatggaaccccaggctctgtacgatgaa
ataagaactgtgcctattgcaaagctggacaggactgttgctgagaaaacaataaaaaaa
tatgtagaagatgaaatggcaaggctccctgataggctgtctataacttggcctgaagga
gatgaattattgccaaatgaaattaggcctgccggaaccccaattggtgcactaagaatc
gaaatactaaacaagaagggggaagcaatgcagaagctcccagggacaagtcacggagga
tcaaagaagctgctggtggaacttaaagtcatattacacacttcaagtggaaacaaagaa
atcatttcacacatcagtcagcatggaggaaaatggccttattggtttaaaaaaatggaa
aatatccagaaactgggtaattatacattgaaattacaagtggtattgaatgaaagtaat
gcagatacctatgcaggaagatcgctaccttctaaagcaataaaattttctattaaagag
ggcaagccagagaagttttcatttggtcttctggattccccttttcgtgttggagttccg
ttcaatattcctttggagttacaggatgaattcggtcacacaacccagctatcatctgat
attcagccagttcttgaagcaagtggtctgtctttacattatgaagaaataactagaggc
ccaaattgtgtaattcaaggtgtcgtagctaaaggtctggttaactcttgtcaaggcaag
aattttaatctgaaggttattattccgggcttaaaagaagattcacagattttgaaaatt
agattgctacctggtcctcctcatcgactaaaagtgaaacctgactcagaaattctagtt
atagagaatggaacagtgttcccatttcaggtggaagttgtagatgagtcagacaatgta
acagcacaaccgaagctgattgtccactgcaagtttctaggtgctccaagcctgccagtc
tacactgtggattgtagtagctctgggaccagcatcctaacagggtcagcaattcacgtt
aagaacattaagaaagaccagacactgactgctaggattgagatacctagttgtaaaaat
gtgtcacctgtggaaaagactatcaagttacttcccagtagccatgttgctcgactacag
atatttagtgtggaaggacaaaaggcgatccaggtcaagcatcaggatgaggttaattgg
gtcgcaggggatgtaatgcagaatctgatttttcaaatgtacgatgaaggagaaagagaa
atcaatattacaccatccttggcagaaaaaatcaaagttaactggactcctgaggttaac
agagaacatttgctacaaggtttgcttcctggtgtgcaagtaccaacatctgtgaaagat
gtgcgctactgccaggtttctttccaagatgaccatgtgtctctggaaagtgcatttaca
atcagaccacttcctgatgaacccaaacatttaaaatgtgagttaaaaggaggaaaaaca
gtgcagatgggccaagagcttcaaggagaaatagttgttatggttgcagatcagtatgga
aatcagatatcagcattttcaccagattctttatctgctttgtcaattgctggagttgga
cttgataactctaacttgaaaaccactctagagaccaagacacaaagtataattgtacga
ggcatcagattcgttccaggtcctcctggacataaggatctttgttttacttggcgagag
ttttctgactttattcgtgtccacctcatttctggacctccaaccaagctgcatcttatc
gactggccagagctaaaagagtccatgccagtgatcaatggaagacagttacctaaccct
ctcgttgttcaactctgtgaccagtgggataatcctgcattagtctcaaatgttaaaata
agtctcataaaaactagcaatttgaagctaataccttcaaaccagcagcataaaacagat
gataagggcagagctaatttgggggtattcactgtttttgctccaaggggagaacacact
ctacaggttaaaggcgtctataataagagttctatagaaggacctacaattcagttaatg
gttcttccagaccctgaaaagcccgttcgtctcaatgttaaatatgataaagatgcctct
tttatagcaggtgacatattcacggattttatggtgagtgtgatctctgaaggtggtagt
gtcatcaaaaatattaatccaacacgcatttccatgaaactgtggaagctgtctagcagc
atgagccgggcaccaacaaatgcagaaacatttagttgtaataaaataaaagacaatgac
aaagaagatggctgcttctatttcagggaaaaagcaacccctagcaaagtcgggacatac
tgtatccagtttgactttatgatcgataaaacaaatacgctcagcagcgagcaggttata
gttgatgttctgcctaatcagcctatgaagttggttcctgacgtccaacctgctacccca
gctgtttctaatgttcgctctattgccagcaggaccttggtcagagacctacatctcagt
atcacagataattatggtaatcatactggaatggacttggttggcactgtagtagctacc
attaaaggttttaatgaggaggacactgacaccccactcttcatcgggaaagttaggaca
cttgaatttccctttgtgaacggttatgctgaaatcacgactctagtgctggcggaaaac
agtcctggaagggatagtactgaatattttattatctttgagcctcgactgtcaactttg
tcaagaacattagaatcctatagcctgccatttatgttttacaatgatgttaaaaagcag
caacaaatggcagcacttacgaaggaaaaggaccagttatctaggtccatcgttatgtat
agaagtctctttgatgccaacaagcaacttgttgatgaaatgaaatgccaagttgaagaa
gcaaaattaaaagaggtccagctgcgaaatgaactaaaagcatgtaatattgatattcct
acaacacaacagatacctcatattgaagcacttttggaaaaaaagatagcagaacaaagt
gaacttaaaaaaaagcccaggagatcatgcactcttccaaactacaccaagcgcagtgga
gatgttttgggaaagatcgcacatctagcacagattgaagatgatcgcgccgcagtggtt
atctcttggcatctggcaagtgacatggactgtgtggtcaccctgaccactgatgctgca
cgctctatctatgatgaaacgcaaggtcgtcagcaggtgttgccccttgattctatttat
aggaaaactgttccagattggaaaagacctctacctcatatccgaaatggtaaattatat
tttaaaccctttggaaatccagtctttgcccgagatttgttaacattcccagataacgtt
gaacactgtgaaacagtttttggtatgctgttaggagacaccattattttggataatcta
gatgcagccaatcattatagaagagaggttgttaaaatcacacactgccccacattactg
accagagacggagaccgtattagaagtaatgggaagtttgggggcctgcagaataaagct
cctccaatggacaaacttcggggaatggtcttcggagctccagtaccaaaacagtgtatg
gtcttggggaaagaaatcgatcttattcagcagtaccgcactgctgtgtgcaagctgaac
actgtgaacaaggatttgagcaatcagttacagtaccttcacactcctgatatgaagaag
aagaaacaagaacttgatgaacaggaaaagagtctgaaactaatagagcaaaagctcggt
atgactcctgcatggaagtgtaatgactcattctgtcactcaccaaaaattgagttgaca
gagtgtccaattcctacaaaaagaatgagaagagaatccaccagacagaatagaagacca
aaaggtgatgtaccaaactga
DBGET
integrated database retrieval system
