Mesomycoplasma flocculare: MYF_01905
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Entry
MYF_01905 CDS
T03538
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mfq
Mesomycoplasma flocculare
Pathway
mfq03030
DNA replication
mfq03410
Base excision repair
mfq03420
Nucleotide excision repair
mfq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mfq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MYF_01905 (ligA)
03410 Base excision repair
MYF_01905 (ligA)
03420 Nucleotide excision repair
MYF_01905 (ligA)
03430 Mismatch repair
MYF_01905 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mfq03032
]
MYF_01905 (ligA)
03400 DNA repair and recombination proteins [BR:
mfq03400
]
MYF_01905 (ligA)
Enzymes [BR:
mfq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MYF_01905 (ligA)
DNA replication proteins [BR:
mfq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MYF_01905 (ligA)
DNA repair and recombination proteins [BR:
mfq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MYF_01905 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MYF_01905 (ligA)
MMR (mismatch excision repair)
DNA ligase
MYF_01905 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MYF_01905 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
PTCB-BRCT
DNA_ligase_ZBD
RNA_ligase
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
AJC49895
UniProt:
A0A0A8E6M6
LinkDB
All DBs
Position
463149..465221
Genome browser
AA seq
690 aa
AA seq
DB search
MENNSKIRAKIFELRKKIENWNHCYYQLQDPVVDDLIYDKELKKLIALEQKYYYLFNLEE
LNSSPSQQVGAKITSKFEKIKHSSPMLSLNKAYTNSELEKWVQKATQILENVTFFVEPKI
DGISISLFYKNGKLVQALTRGDGMFGENVLINVLKISDKFIPKKISYFDDLEIRGEIYIN
NSLFSKLQLESKMFKNPRNAASGILRRYKKAKNKNINLAENETDFNYLSACFYGLMYPEK
HKINSQSEAIEFLKKLNFPVNNFQKQRNNLSEVLAFINQIKKKRNALDYNIDGVVIKINE
FSIYDELGSTVKFPHSAIAFKFEDDIAKTILLDIFPTVGRTGKITYNAKIRPTILAGTLV
SSAVLPNYSYIKNLKLNLNSEVYVKKAGEIIPQIIGSVNDHQKTNFSITENCPKCNSKLE
YSDSGLDQFCLNRFCPEIILQKIVHFCSKEALNIETLAKKRIKILLEKKLISNICDIFYL
KEKLELIHSEFKNKKSSDNIKENSPSLQIRSIMKLLNEIEKAKNIDFYRLIFGLGIKNVG
LKAAKILSKYVKNISELQNLDFSSLNNQQDFGPVIIESLNNYFKNSVNLQLLNCLEKINF
NFNETLILDPTNAWASFAISGKLSKSRGEFIKIIEKSGAIFHNSISKKTKFLLLGEDSGS
KIEKAKKIGVKIINESQFLELIKQRKNPIK
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggaaaataacagtaaaattcgtgctaaaatttttgaacttagaaaaaaaattgaaaat
tgaaaccattgttattatcaattacaagatcctgttgtcgatgatttaatttatgataaa
gagttaaagaaactaattgccttagaacaaaaatattattatttgtttaatttagaagaa
ctaaacagttcaccaagccaacaagtgggagcaaaaattacttctaaatttgaaaaaata
aaacattctagcccaatgttgtcgttaaacaaagcctatacaaattcagaactggaaaaa
tgggtgcaaaaagcaacacaaattttagagaatgtcaccttttttgttgagcctaaaatt
gatggaatttctatttcgcttttttataaaaatggaaagctagttcaggcgctaactcgg
ggtgatggaatgtttggcgaaaatgttttaattaatgttcttaaaattagtgataaattt
atccctaaaaaaatctcatattttgacgatttagaaattcgtggcgaaatttatattaat
aattccctattttcaaaactacaattagaatcgaaaatgtttaaaaacccacgcaatgca
gcaagtggaattttacgtcggtataaaaaagcgaaaaacaaaaatataaatttggcagaa
aatgaaaccgattttaattatttaagcgcttgcttttatggacttatgtatcctgaaaaa
cataaaattaattcccaatccgaggcaattgaatttttgaaaaagctaaattttccagta
aataattttcaaaaacaacgcaataatttaagtgaagttcttgcttttattaaccaaata
aagaaaaaacgcaacgcactcgattacaatattgatggagttgtaattaaaattaacgaa
ttttcaatttatgatgaattaggctcaaccgttaaatttcctcatagcgcaattgccttt
aaatttgaagatgatattgcaaaaacaatacttttagacatttttccaactgttggtaga
acaggaaagataacttataatgcgaaaattcgaccaacaatacttgccggaacattggtc
tcatctgcggttttgccaaattattcttatattaaaaatttaaaattaaacctaaattca
gaagtttatgttaaaaaagcaggtgaaataattccacaaattattggtagtgttaacgat
catcaaaaaacaaatttttctataactgaaaattgcccaaaatgtaactcaaagttagag
tatagtgattctgggcttgatcagttttgtttaaatcgcttttgccctgaaattattttg
caaaaaatagttcatttttgttcaaaagaagcattaaatattgaaactttagctaaaaaa
agaattaaaattcttctggaaaaaaagttaatttccaatatttgtgatattttttattta
aaggaaaaacttgaactaattcattcagaatttaaaaataaaaaatcatcagacaatata
aaagaaaattcaccttctttgcaaattagatcgattatgaaattgctaaatgaaatcgaa
aaagcaaaaaacatcgatttttatagactaatttttggtttaggaataaaaaatgttggt
ttaaaagcagctaaaattctttcaaaatatgttaaaaatatttcggaattacaaaattta
gattttagctcgcttaataatcaacaagattttggaccagtaattattgagtcattaaat
aattattttaaaaattcggtaaacctgcaattattaaattgtcttgaaaaaatcaatttt
aattttaatgaaactttaatccttgatcctacaaacgcttgggcaagttttgcaatttca
ggaaaattgagtaaatcaagaggcgaatttataaaaataatcgaaaaatcaggagcaatt
tttcacaattctataagcaagaaaactaaatttttgctcctaggcgaggactctggttca
aaaattgaaaaagctaaaaaaattggtgtgaaaatcattaacgaatcacagtttttggag
ctaatcaagcaaagaaaaaatccgattaaataa
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