Magnetovirga frankeli: D5125_13160
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Entry
D5125_13160 CDS
T11075
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mfra Magnetovirga frankeli
Pathway
mfra03030
DNA replication
mfra03410
Base excision repair
mfra03420
Nucleotide excision repair
mfra03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mfra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D5125_13160 (ligA)
03410 Base excision repair
D5125_13160 (ligA)
03420 Nucleotide excision repair
D5125_13160 (ligA)
03430 Mismatch repair
D5125_13160 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mfra03032
]
D5125_13160 (ligA)
03400 DNA repair and recombination proteins [BR:
mfra03400
]
D5125_13160 (ligA)
Enzymes [BR:
mfra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D5125_13160 (ligA)
DNA replication proteins [BR:
mfra03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D5125_13160 (ligA)
DNA repair and recombination proteins [BR:
mfra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D5125_13160 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D5125_13160 (ligA)
MMR (mismatch excision repair)
DNA ligase
D5125_13160 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D5125_13160 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
Nlig-Ia
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
AphA_like
Motif
Other DBs
NCBI-ProteinID:
QFY90353
LinkDB
All DBs
Position
1692024..1694048
Genome browser
AA seq
674 aa
AA seq
DB search
MKDQPAEQIDQLRRQIEGHNYSYYVLDDPQIPDAEYDRLFRQLQQLEAEHPELVRPDSPT
QRVGAAPLAKFAEVVHARPMLSLNNAFDEAEMADFDRRARERLASPGPLVYLAEPKLDGL
AINLRYEQGRLVQAATRGDGSSGEDVTQNIRTLASIPLRLLGQGWPEVLEVRGEVFMPRA
AFERLNQQAREQGSKGFANPRNAAAGSLRQLDPRITANRALAFYAYGLGEVSGERLADSQ
SASLARLRDWGLPISPEQRRVEGLEGCLAYYRQMGERRDGLDYDIDGVVFKLDALDQQEW
LGQISRAPRWALAFKFPAQEALTRLLGVDFQVGRTGALTPVARLEPVLVGGVTVSNATLH
NMDEVRRKDICIGDQVIVRRAGDVIPEVVRALPDSRPVDAQVIERPSQCPVCGSDVVQAE
GEAVARCSGGLYCSAQRKEALKHFASRKAMDIEGLGDRLIDQLVEQGLVQNPAELYGLQA
EQLVGLERMGRKSADKLLAALARSRDTRLERFLFALGIREVGESTARNLARHFGDLAPLI
AASEEELLQISDIGPIVARHIHSFFRQGHNQEVIQALLEAGISWPKQEPTRPERQPLAGQ
TFVITGTLSRPREQIKAELLALGAKVSGSLSKKTHYLIAGSEAGSKLAKAQALGVQVIDE
AELERLKTEAAGLQ
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatcaaccggccgagcaaatagaccagctgcggcggcagatcgaggggcacaac
tacagctactacgtcctcgacgacccccagatccccgacgccgaatacgaccgcctgttt
cgccagctgcagcagctggaggcggagcacccggagctggtgcggcccgattctccgacc
cagcgggtaggggcggcacccttggctaagttcgccgaggtggtccacgcccggcccatg
ctgtcgctgaacaacgcctttgatgaggccgagatggcggattttgaccgccgtgcccgc
gagcgcctggccagtcccggtcccctggtctatctggccgagcccaagctcgatggcctg
gcgatcaacctgcgctatgagcagggtcggctggtgcaggccgccacccggggcgatggc
agcagcggcgaggatgtcacccagaacatacgcaccctggccagcatccccctgcgcctg
ctcggccaaggctggcccgaggtgctggaggtgcgcggcgaggtgttcatgccccgagcg
gcctttgagcggctcaatcagcaggcccgagagcagggcagcaagggcttcgccaatccg
cgcaatgccgccgccggctccctgcgccagctcgatccccgcattaccgccaaccgcgcc
ctggccttttacgcctacggcctgggtgaggtcagcggcgagcgcctggccgacagccaa
agcgccagcctggcccgcttgcgtgactggggcctgccgatctcgccggaacagcgccgg
gtggagggcctggagggctgtctggcctattaccgacagatgggcgagcgccgcgatggc
ctggactacgacatagacggcgtggtgttcaaactcgacgccctggatcagcaggagtgg
ctgggccagatcagccgggcgccgcgctgggccctggccttcaaattccctgcccaagag
gccctgacccgcctgctcggggtggattttcaggtcggtcgcaccggtgccctgaccccg
gtggcgcggctggagccggtgttggtcggcggggtcacggtcagcaatgccaccctgcac
aatatggacgaggtgcggcgcaaggatatctgtatcggtgatcaggtcatcgtacgccgc
gccggcgatgtcattcccgaggtggtgcgcgcgctgcccgacagccgcccggtcgatgcc
caggttatcgaacggcccagccagtgcccggtatgcggctccgatgtggtgcaggccgag
ggcgaggcggtggcccgctgtagcggtggcctctattgcagcgcccagcgcaaggaggcg
ctgaaacactttgccagccgcaaggccatggatatagagggtctgggtgatcgccttatc
gaccagttggtggagcagggtctggtacagaatccggcggagctctatgggctgcaggcc
gagcagctggtcgggctggagcgcatggggcggaagtcagcggataagctgctggccgcc
ttggcacgcagccgggatacccgtctggagcgctttctgttcgccctgggcatccgcgag
gtgggggagagcaccgcccgcaacctggcccggcacttcggcgaccttgcccccctgatc
gccgccagtgaggaagagctgctgcagatcagcgatataggacccatagttgcccgccat
atccacagcttctttcgacaggggcataaccaggaggtgatccaggccctgcttgaggcc
gggatcagctggcctaaacaggagcccacccgtcccgagcgccaacccctagccggtcag
accttcgtcatcaccggcaccctcagccgcccccgcgagcagatcaaggccgaactcctg
gccctgggggccaaggtcagcggcagtctgtccaaaaagacccattacctgatcgcgggc
agcgaggccggctctaaattggccaaggctcaagcgctgggggtgcaggtcatcgacgag
gccgagttggaaaggctaaagaccgaagcggcagggttgcagtag
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