Corallococcus macrosporus HW-1: LILAB_35665
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Entry
LILAB_35665 CDS
T01558
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mfu
Corallococcus macrosporus HW-1
Pathway
mfu03030
DNA replication
mfu03410
Base excision repair
mfu03420
Nucleotide excision repair
mfu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LILAB_35665
03410 Base excision repair
LILAB_35665
03420 Nucleotide excision repair
LILAB_35665
03430 Mismatch repair
LILAB_35665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mfu03032
]
LILAB_35665
03400 DNA repair and recombination proteins [BR:
mfu03400
]
LILAB_35665
Enzymes [BR:
mfu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LILAB_35665
DNA replication proteins [BR:
mfu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LILAB_35665
DNA repair and recombination proteins [BR:
mfu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LILAB_35665
NER (nucleotide excision repair)
GGR (global genome repair) factors
LILAB_35665
MMR (mismatch excision repair)
DNA ligase
LILAB_35665
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LILAB_35665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
RNA_pol_A_CTD
BRCT_2
POLH-Rev1_HhH
Motif
Other DBs
NCBI-ProteinID:
AEI69014
UniProt:
F8CLX8
LinkDB
All DBs
Position
8769221..8771239
Genome browser
AA seq
672 aa
AA seq
DB search
MDDFQNAAARARELHRELAHHNYRYYVLDSPEVSDAQYDKLMRELQDLEARHPSLQTPDS
PTQRVGGAAAEAFGEVVHRAPMLSLANLFEDQGLIEFDERIRKLLGLPAISYVCEPKLDG
LAIALRYEKGAFVQGATRGDGTTGEDVTANLRTIRSLPMSLFPQDGVKVPEVLEVRGEVF
IRKKDFQKLNEKREEEGEPLFANPRNAAAGSLRQLDPRMTAARPLSVFLYECVPGEGVPA
FKTHIEKLEYLKTLGLPINQYRRAEGLEGVREAYDASLKGRHELPFEVDGMVVKVDDEDQ
RKRLGQVSKSPRWAVAYKFPPEEESTEVLDIGIQVGRTGALTPVAHLKPVKVGGVTVARA
TLHNEDELRRKDVRKGDTVFVRRAGDVIPEIVSVVLSRRPSDSAPFEFPRHCPVCHAVAT
KDEDGAIIRCTGASCPAQLVEKIRHFASRLAMDIEGLGDKLATQLVSTGSVKTFADLYAL
TKEKLLTLERMGDKSADNLVAALERSKQTTQRRFLYALGIRHVGDATAKALAEAFPQAEK
LFGASLEDISRVKDVGPIMAQVIHTFFQEPQNQEAIRALLAAGVQPAAPQVATGGPFVGK
SVVLTGAMTGMTREQAKEEVERRGGKVAGSVSRKTDFVVAGEDAGSKLKKAQELGVRILD
EQAFLQMLQTNA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
gtggacgacttccagaatgccgcagcccgagcccgtgagctccaccgtgagctggcgcac
cacaactaccgttactacgtcctcgactcgcccgaggtcagcgacgcgcaatacgacaag
ctgatgcgcgagctgcaggacctggaggcgcgacatccgagcctccagacgccggactcg
cccacccagcgcgtgggcggcgcggcggccgaggcgttcggcgaggtggtgcaccgggcg
cccatgctctcgctggccaacctcttcgaggaccagggcctcatcgagttcgacgagcgc
atccgcaagctgctgggcctgcccgccatctcctacgtctgcgagcccaagctggacggg
ctcgccatcgcgttgcgctacgaaaagggcgccttcgtccagggcgccacccggggtgac
ggcaccaccggcgaggacgtcaccgccaacctgcgcaccatccgcagcctgcccatgtcg
ctgttcccccaggacggcgtgaaggtgccggaggtgctggaggtgcgcggcgaggtcttc
atccgcaagaaggacttccagaagctcaacgagaagcgcgaggaggaaggcgagccgctc
ttcgccaacccgcgcaacgccgccgccggcagcctgcgccagttggacccgcgcatgacg
gccgcccgtcccctctccgtgttcctctacgaatgcgtccccggggagggggtccccgcc
ttcaagacgcacatcgagaagctggagtacctgaagacgctgggcctgcccatcaaccag
taccgccgcgccgagggcctggagggcgtgcgcgaggcgtatgacgcctccctgaagggc
cgccacgagttgcccttcgaggtggacggcatggtggtgaaggtggatgacgaggaccag
cgcaagcgcctgggccaggtctccaagagcccgcgctgggcggtggcctacaagttcccg
ccggaggaggagtccacggaggtgctggacatcggcatccaggtgggccgcacgggcgcg
ctgacgccggtggcgcacctgaagccggtgaaggtgggcggcgtcacggtggcgcgcgcc
acgctgcacaacgaggacgagctgcggcgcaaggacgtgcgcaagggcgacaccgtcttc
gtgcgccgcgccggcgacgtgattccggaaatcgtctccgtggtgctgtccaggcgcccg
tcggactccgcccccttcgagttccccaggcactgcccggtgtgccatgcggtggccacc
aaggacgaggacggggccatcatccgctgcacgggcgcctcgtgccccgcgcagctcgtg
gagaagatccgccacttcgccagccgcctggccatggacatcgagggcctgggggacaag
ctggccacgcagctggtgtccaccggcagcgtgaagaccttcgcggacctctacgcgctc
accaaagagaagctgctgacgctggagcgcatgggcgacaagagcgcggacaacctggtc
gcggcgctggagcgctccaagcagaccacgcagcggcgcttcctctacgccctgggcatc
cgccacgtgggtgacgccaccgccaaggcgctggcggaggccttcccccaggcggagaag
ctctttggcgccagcctggaggacatctcccgggtgaaggacgtgggccccatcatggcc
caggtcatccacaccttcttccaggagccgcagaaccaggaggccatccgcgcgctgctg
gcggcgggcgtccagcccgcggcgccccaggtcgccaccgggggccccttcgtgggcaag
tcggtggtgctcaccggcgcgatgacgggtatgacgcgggagcaggccaaggaggaggtc
gagcgccggggcggcaaggtcgccggaagtgtctcacgcaagaccgatttcgtggtggcg
ggcgaggatgcgggcagcaagctgaagaaggcccaggaactcggggtaagaatcctggac
gagcaggcgttcctgcagatgctgcagacgaacgcatag
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