Megamonas funiformis: GXM21_04110
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Entry
GXM21_04110 CDS
T06475
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mfun
Megamonas funiformis
Pathway
mfun03030
DNA replication
mfun03410
Base excision repair
mfun03420
Nucleotide excision repair
mfun03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mfun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GXM21_04110 (ligA)
03410 Base excision repair
GXM21_04110 (ligA)
03420 Nucleotide excision repair
GXM21_04110 (ligA)
03430 Mismatch repair
GXM21_04110 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mfun03032
]
GXM21_04110 (ligA)
03400 DNA repair and recombination proteins [BR:
mfun03400
]
GXM21_04110 (ligA)
Enzymes [BR:
mfun01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GXM21_04110 (ligA)
DNA replication proteins [BR:
mfun03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GXM21_04110 (ligA)
DNA repair and recombination proteins [BR:
mfun03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GXM21_04110 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GXM21_04110 (ligA)
MMR (mismatch excision repair)
DNA ligase
GXM21_04110 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GXM21_04110 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
Nlig-Ia
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
RNA_ligase
BRCT_2
HHH
RPA_interact_C
FANCL_C
Motif
Other DBs
NCBI-ProteinID:
QIB59597
LinkDB
All DBs
Position
838015..840015
Genome browser
AA seq
666 aa
AA seq
DB search
MDDIKKQIDELKKKILYHNDLYYNQDNPEIEDAQYDELMRQLKKLEAENPELITKDSPTQ
KVGGMAKREAGVLVKHDVPMLSLQDVFSAEEVETFVDNMQKELDNPEFVVEEKIDGLSLA
LRYVDGELKLAVTRGDGVVQGEDVTANAMQIKDIKKKIKEKLPYFEVRGEVYMTREAFSL
VNEKQELLGKRLFANPRNCAAGTLRQLDSKIIKERNLSMFIFNLQKVEGIELKSHTQAYE
FMHKQGMKIIHSYKVCKTKKEVLQAIEEIGNRRGDLDYDIDGAVVKINDFAQREKLGATS
KVPKWAIAYKYPPEEKETKLLNIELSVGRTGRITPTAVFEPVWLCGTKVERATLHNQDFI
DDLDIRIGDTIKVYKSGEIIPKVRCVIKEKRPQDSKPFIIGDTCPVCNAHTIHDDKADIR
CSNPHCPAQIERWIINFVGRDAMDIKGFGMMYIKTLIENGYLKDPADIYYLHNYRDELIA
KGLIGKEKNTDKLLNAIEKSKQNAPWRLLTGLGILNIGKSASRSLINHFHSFDDIAKATE
EEIKQVADIGEISAKLVYEFFHDEENIALLNKLKEANVNMAEEKTEKTSDKFQGLTFVLT
GTLETMGRSEASEIIQSLGGKASGSVSKKTSYVIAGANAGSKLTKAESLGVKIITEQEFL
AMVKEN
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggacgatataaaaaagcaaatagatgaattaaagaaaaaaatcttatatcataatgat
ttatattacaatcaagataatccagaaatagaagatgctcaatatgatgaattgatgcgt
caattaaaaaaattggaagctgaaaatccagaattaattacaaaagattcaccaacgcaa
aaagtaggcggaatggcaaaacgtgaagctggcgttctcgtaaaacatgatgtgccaatg
cttagcttgcaagatgtattttctgctgaagaagtggaaacttttgtagataatatgcaa
aaagaattagataatccagaatttgtagtagaagaaaaaatagatggtttatctttagca
cttcgttatgtagatggtgaattgaaattagctgttactcgtggtgatggtgttgtacaa
ggtgaagatgtaacagctaatgctatgcagataaaagatattaagaaaaaaataaaagaa
aaattgccttattttgaagttcgtggagaagtatatatgacgcgagaagctttttcctta
gtaaatgaaaaacaagaattattggggaaaagattatttgctaatcctcgaaattgtgca
gcaggtacacttcgccaattagacagcaaaatcattaaagaacgcaatttatccatgttt
atttttaatttgcaaaaggtagaaggtatagaattaaaatcgcatacacaggcatatgaa
tttatgcacaaacaaggaatgaagattatacattcatataaagtatgtaaaactaaaaaa
gaagttttacaagctatagaagaaattggaaatcgtcgtggtgatttagattatgatatt
gatggagctgttgtaaaaataaatgattttgcacaaagagaaaaattaggagcaacatct
aaagttcctaaatgggcaatagcttataaatatccaccagaagaaaaggaaactaaatta
ttaaatatagaattatccgtaggtcgtacaggaagaattacgccgacagcagtatttgaa
ccagtttggctctgtggtacaaaagtagaacgagctacattgcacaatcaagattttatt
gatgatttagatatacgcattggcgatacaataaaagtatataaatcaggggaaattatt
ccgaaagttcgttgtgtaatcaaagaaaaacgacctcaggatagcaagccttttatcatt
ggcgatacttgccctgtatgtaatgctcatactattcacgatgataaagcagatattcgc
tgtagtaatccacattgcccagcacagattgaacgttggataataaattttgtcggtcga
gatgctatggatatcaaaggttttggcatgatgtatataaaaactttgattgaaaatgga
tatttaaaagatccagcagatatatattatttacacaattatcgagatgaattaatagca
aaaggattgattggcaaggaaaaaaatactgataaacttttaaatgcaatcgaaaaaagt
aagcaaaatgcaccatggagattgcttacaggactgggcattttgaatataggtaaatca
gcaagtcgttccttgataaatcattttcattcttttgatgatatagctaaagccaccgaa
gaagagataaaacaagtagcagatattggggaaataagtgcaaaacttgtatatgaattt
ttccatgatgaagaaaatattgctttattaaataaattaaaagaagcaaatgtcaatatg
gcagaggaaaagacagaaaaaacatctgataaattccaaggtttgactttcgtattaaca
ggaacattagaaaccatgggcagaagtgaagctagtgaaattattcaatctctaggcgga
aaagcttctggttctgtatcgaaaaagacatcttatgtaattgcaggggcaaatgcaggc
agtaaacttacaaaagctgaaagtttaggtgtaaaaataattactgaacaagaattttta
gcaatggttaaagaaaattaa
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