KEGG   Massilia forsythiae: HH212_18260
Entry
HH212_18260       CDS       T08391                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
mfy  Massilia forsythiae
Pathway
mfy03030  DNA replication
mfy03410  Base excision repair
mfy03420  Nucleotide excision repair
mfy03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mfy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HH212_18260 (ligA)
   03410 Base excision repair
    HH212_18260 (ligA)
   03420 Nucleotide excision repair
    HH212_18260 (ligA)
   03430 Mismatch repair
    HH212_18260 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mfy03032]
    HH212_18260 (ligA)
   03400 DNA repair and recombination proteins [BR:mfy03400]
    HH212_18260 (ligA)
Enzymes [BR:mfy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     HH212_18260 (ligA)
DNA replication proteins [BR:mfy03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     HH212_18260 (ligA)
DNA repair and recombination proteins [BR:mfy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     HH212_18260 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HH212_18260 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     HH212_18260 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      HH212_18260 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden OB_DNA_ligase HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT BRCT_2 DUF4796_N Nlig-Ia
Other DBs
NCBI-ProteinID: QJE03444
UniProt: A0A7Z2ZVF2
LinkDB
Position
4305174..4307543
AA seq 789 aa
MAWLVEELNRHIYNYHVLDAPTIPDAEYDKLFRELQALELAHPQAQSVDSPTFRVGAAPI
PEFSQVTHALPMLSLNNGFSDEDIDNFDRRVRDGLDVARVAYAAELKFDGLAISLRYENG
VFVQAATRGDGVTGEDVSANIRTVRVIPLRLHGPDIPAVLEVRGEVLMFKDDFARLNARQ
REAEQKEFANPRNAAAGSLRQLDARITAQRKLRFFAYGIGVLEGAPPPASHSAVLDWFER
LGLPVSKERAVVEGCQGMLGYFNDIGARRKTLPYEIDGVVYKVDRVADQRLLGFVSRAPR
FALAHKFPAEEALTVVQAIDVQVGRTGAITPVARLVPVSVGGVTVTNATLHNEDEVQRKD
VRVGDTVVVRRAGDVIPEVLSVLLERRPEPAPPVYRLPQQCPVCGSHVVREEGEAIARCS
GGLSCAAQRKEAIRHFAGRRMMDIEGLGDRYIDSLVESNLIHGVADLYRLTLEDLLAMKR
LADERDGTTPETVKQGKIPTRWADNLLAAIAASRRPPLERLLFALGIRHVGESTAKTLAD
WLGSLALVRRAPAALLRVLPDIGGTVAQAIADFFAEVKNQQALDALLAAGVAPQGEHAPR
AQLRERLDQVELLAALGIPKLTGPRARQLLDGRTLEDLAHSKVFGVFGLPEAVVAPLETW
MAEPANRAALDAVADLRRELLAQLDALPQAAAGPAGALEGKTFVLTGTLPTMSRDGAGAL
IEAAGGKVSGSVSKKTSYVVAGADAGSKLEKAEALGVTVLDEAGLLALLGTDGGSAASNT
NEAKQVEQE
NT seq 2370 nt   +upstreamnt  +downstreamnt
atggcctggctggtcgaggaactcaaccgccacatctacaattaccacgtgctggacgcg
ccgaccattccggacgccgagtacgacaagctgttccgcgaactgcaggcgctggaactg
gcgcacccgcaagcgcaatccgtcgattcgccgaccttccgggtcggcgccgcaccgatc
cccgaattcagccaggtgacgcacgcgctgccgatgctgtcgttgaacaacggcttttcg
gatgaagacatcgacaacttcgaccgccgcgtgcgcgacggcctggacgtggcgcgcgtg
gcctacgcggccgagttgaaattcgacggactggcgatcagcctgcgctacgaaaacggc
gtgttcgtgcaggccgccacccgcggcgacggtgtgacgggcgaggacgtcagcgccaac
atccgcaccgtgcgcgtgatcccgctgcgcctgcacggccccgacatcccggccgtgctc
gaggtgcgcggcgaggtgttgatgttcaaggacgatttcgcgcgcctgaacgcgcgccag
cgcgaggccgaacagaaggaattcgccaatccgcgcaacgccgccgccggcagcctgcgc
cagctcgacgcgcgcatcaccgcccagcgcaagctgcgtttcttcgcctacggcatcggc
gtgctggaaggcgcgccgccgccggcatcgcactcggcggtgctggactggttcgagcgc
ctcggcctgccggtatcgaaggagcgcgccgtggttgagggttgccagggcatgctgggc
tatttcaacgacatcggcgcgcgccgcaagacgctgccgtacgagatcgacggcgtggtg
tacaaggtcgaccgcgtggccgaccagcgcctgctcggcttcgtctcgcgcgcgccgcga
ttcgcgctggcgcacaagttcccggccgaggaagccttgacggtcgtgcaggcgatcgac
gtgcaggtcggccgcaccggcgccatcacgccggtggcgcgcctggtgccggtgtcggtg
ggcggcgtcaccgtcaccaacgccaccctgcacaacgaggacgaggtgcagcgcaaggac
gtgcgcgtgggcgatacggtcgtcgtgcggcgcgccggcgacgtgattccggaagtgctg
tcggtgctgctggaacggcgtcccgagccggcgccgccggtgtatcggttgccgcagcaa
tgcccggtatgcggctcgcacgtggtgcgcgaggaaggcgaggcgatcgcccgctgctcc
ggcggcctgagctgcgccgcccagaggaaggaagcgatccgccacttcgccggccggcgc
atgatggacatcgagggcctgggcgaccgctacatcgacagcctggtggaatcgaacctg
atccacggcgtggccgacctgtaccgcctcacgctggaagacctgctggcgatgaagcgc
ctggccgacgagcgcgacggcaccacgccggaaaccgtcaagcagggcaagatcccgacc
aggtgggccgacaacctgctggccgcgatcgccgccagccgccgcccgcccctggagcgc
ctgctgttcgcgctcggcatccgccacgtgggcgaatccaccgccaagaccctggccgac
tggctcggcagcctggcgctggtgcggcgcgcgccggccgcgctgctgcgcgtgctgccc
gacatcggcggcacggtggcgcaagcgatcgccgatttcttcgccgaagtcaagaaccag
caggcgctggatgcgctgctggccgccggcgtcgcaccgcagggagaacacgcgccgcgc
gcgcaactgcgcgaacgcctcgaccaggtcgagctgctggccgcgctcggcatcccgaaa
ctgaccggtccgcgcgcgcgccagttgctggacgggcgcacgctggaagacctggcgcat
tcgaaggtgttcggcgtgttcggcctgccggaagcggtggtggcgccgctggaaacctgg
atggcagaacccgccaaccgcgccgccctggacgcggtggccgacctgcggcgcgaactg
ctggcgcagctggacgcgctgccgcaggccgcggccgggcctgccggcgcgctggagggc
aagaccttcgtcctgaccggcacgctgccgaccatgtcgcgcgacggggccggcgcgctg
atcgaggcggccggcggcaaggtgtccggttcggtgtcgaagaagacctcgtacgtggtg
gccggtgccgatgccggcagcaagctggaaaaggccgaagcgctgggggtgacggtgttg
gacgaggccggcctgctggcgctgctgggaaccgatggcgggtcggcggcatcgaatacg
aacgaagcgaaacaggtggagcaggaatga

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