Microbacterium galbinum: KV396_14000
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Entry
KV396_14000 CDS
T10384
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mgab Microbacterium galbinum
Pathway
mgab03030
DNA replication
mgab03410
Base excision repair
mgab03420
Nucleotide excision repair
mgab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mgab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KV396_14000 (ligA)
03410 Base excision repair
KV396_14000 (ligA)
03420 Nucleotide excision repair
KV396_14000 (ligA)
03430 Mismatch repair
KV396_14000 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mgab03032
]
KV396_14000 (ligA)
03400 DNA repair and recombination proteins [BR:
mgab03400
]
KV396_14000 (ligA)
Enzymes [BR:
mgab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KV396_14000 (ligA)
DNA replication proteins [BR:
mgab03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KV396_14000 (ligA)
DNA repair and recombination proteins [BR:
mgab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KV396_14000 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KV396_14000 (ligA)
MMR (mismatch excision repair)
DNA ligase
KV396_14000 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KV396_14000 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
AAA_5
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
UPL15523
UniProt:
A0ABY4IVS6
LinkDB
All DBs
Position
2907150..2909483
Genome browser
AA seq
777 aa
AA seq
DB search
MPDIISLEDARTEAEELTTRILEAKDAYYGRDTSLVDDATYDGWMHRLEELERLHPELQG
QDSPTQMVGAAETTGLATIEHAERMLSLDNVFSLDELREWAAKTRASAGRDVAWLTELKI
DGLAINLRYENGVLTSAATRGDGRVGEIVTENALRLPEIPERLDGEGHPAIVEVRGEVFI
PVAAFERLNAAQASFRERAYSDALARWEARTGAKRPFDEEKARTAAARRFPSFANPRNAA
SGGLRQQIDKKDGLELEAGLLRIESLALYVHGIGAWQNPPVAAQSEVYELLSTWGLPTSP
HAKVCASIDEVTDFVEYFGEHRHDIEHELDGIVVKIDELELHDELGATSRAPRWAIAYKY
PPEEVQTKLLDIVVSVGRTGRATPFAVMAPAQVAGSVVRQATLHNKDVVKAKGVLIGDTV
VLRKAGDVIPEVLGPVVERRDGSEREFVMPEVCPECGTELRAMKEGDIDLRCPNARSCPA
QVRGRVEHIGSRGALDVEALGEVTAAALTQPTSPAEPPLVTEAGLFDLSLEQLVPIELFV
RDAETGLPKQDDDGIVKTRAPFRRNPTAAEKKSGIEGPQPSSQAVTLLAELEKAKTKELW
RLLVSLNIRHVGPVAARALAQWFGSLDAIRGASREELAAVEGVGGIIADSLLAWFDVDWH
VAIVDQWAAAGVQWATPGHPGPGAAVSAGGVLEGLTIVATGSLDGYTREGAQEAIIQAGG
KAASSVSKKTDFVAAGPGAGSKLGKAEELGIRILDAAQFHLLVTEGPEALGEVSSAE
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgacatcatctcgctcgaagacgcccgcaccgaggccgaggagctgaccacccgc
atcctcgaagcgaaggatgcctactacggtcgcgatacctcgctggtcgacgacgcgacc
tacgacgggtggatgcatcggctcgaagaactcgagcgtctgcatcccgagctgcagggt
caggattcgcccacgcagatggtcggcgcggccgagacgaccgggctcgcgacgatcgag
cacgccgagcgcatgctcagcctcgacaacgtgttctccctcgacgagctccgggagtgg
gcggcgaagacccgcgcctccgccggtcgtgatgtcgcgtggctcaccgagctgaagatc
gacggcctcgcgatcaatctccgctacgagaacggcgtcctcacctccgcggccacgcgc
ggcgacggacgggtcggcgagatcgtgaccgagaacgcgctgcggctgccggagatcccc
gagcgcctcgacggcgaagggcatcccgcgatcgtcgaggtgcgcggcgaggtcttcatc
ccggtggccgcgttcgagcgactcaacgctgcgcaggcgtccttccgggaacgcgcctac
tccgatgcgctcgcgcgctgggaggcccgcaccggtgcgaagcgcccgttcgacgaggag
aaggcgcgtacggcggccgctcgtcgtttcccctcgttcgccaacccccgcaatgccgcc
agtggcgggctgcgccagcagatcgacaagaaggacggcctcgagctcgaggcgggactg
ctgcgcatcgaatccctcgctctctatgtgcacggcatcggcgcctggcagaacccgccg
gtcgcggctcagagcgaggtgtacgagctcctctcgacctggggcctcccgacgagcccg
cacgcgaaggtctgcgcgagcatcgacgaggtcaccgacttcgtggagtacttcggcgag
catcgtcacgacatcgaacacgagctcgacggcatcgtggtcaagatcgacgagctcgaa
ctccacgacgagctcggcgcgacgagtcgggcgccccgatgggcgatcgcctacaagtac
ccgcccgaggaggtgcagacgaagctgctcgacatcgtcgtctcggtcgggcgcaccggg
cgcgccacacccttcgcggtgatggccccggcgcaggtggcgggttccgtcgtgcgccag
gccacgctgcacaacaaggacgtggtcaaggcgaagggcgtgctgatcggagacacggtc
gtgctccgcaaggccggcgacgtgatccccgaggtgctgggcccggtcgtcgagcgtcgc
gacgggtcggagcgcgagttcgtgatgccggaggtctgccccgagtgcggcacagagctg
cgggcgatgaaggagggcgacatcgatctgcgttgccccaacgcccgctcgtgccccgcc
caggtgcgcggtcgtgtcgagcacatcggttcgcgtggtgcgctcgatgtcgaggcgctc
ggtgaggtgacggcggccgcgctcactcagccgacgtcaccggcggagcccccgctcgtg
accgaggccggtctgttcgacctgtcgttggagcagctggtcccgatcgagctgttcgtg
cgcgacgccgagaccggcctgcccaagcaggacgacgacggcatcgtcaagacccgtgcg
ccgttccgtcgcaacccgacggcagccgagaagaagtcgggtatcgaaggtcctcaaccg
tcgtcccaagccgtgacgctgctggcggagctggagaaggcgaagaccaaggaactctgg
cgcctgctggtctcgctcaacatccgtcacgtcggaccggtcgcggcgcgcgcactggcc
cagtggttcggctcgctcgatgcgatccgtggggcgtctcgcgaggagctggcggccgtc
gaaggagtgggcgggatcatcgccgactcccttctggcatggttcgacgtggattggcac
gtcgcgatcgtcgatcagtgggcggcggcgggagtgcaatgggcgacccccggacacccc
ggccccggagccgccgtctcggccggaggcgtgctcgaggggctcacgatcgtggccacg
gggtcgctcgacgggtacacgcgtgaaggcgcccaggaggcgatcatccaggccggcgga
aaagcggcctcgagcgtctcgaagaagaccgacttcgtcgccgcaggaccgggggccgga
tccaagctcggcaaggccgaggaactcggcatccgcatcctcgacgccgcgcagttccac
ctgctggtgacggagggacccgaggcactcggcgaggtgtcttcggcggaatga
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