Rasiella rasia: G5B37_14415
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Entry
G5B37_14415 CDS
T06461
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mgel
Rasiella rasia
Pathway
mgel03030
DNA replication
mgel03410
Base excision repair
mgel03420
Nucleotide excision repair
mgel03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mgel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G5B37_14415 (ligA)
03410 Base excision repair
G5B37_14415 (ligA)
03420 Nucleotide excision repair
G5B37_14415 (ligA)
03430 Mismatch repair
G5B37_14415 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mgel03032
]
G5B37_14415 (ligA)
03400 DNA repair and recombination proteins [BR:
mgel03400
]
G5B37_14415 (ligA)
Enzymes [BR:
mgel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G5B37_14415 (ligA)
DNA replication proteins [BR:
mgel03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G5B37_14415 (ligA)
DNA repair and recombination proteins [BR:
mgel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G5B37_14415 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G5B37_14415 (ligA)
MMR (mismatch excision repair)
DNA ligase
G5B37_14415 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G5B37_14415 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
RNA_ligase
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QIE60707
UniProt:
A0A6G6GQ91
LinkDB
All DBs
Position
3236239..3238230
Genome browser
AA seq
663 aa
AA seq
DB search
MNTEEQINQLRAQLREHNYNYYVLDNPTISDYDFDLLLKSLQALETAHPEFYDPNSPTLR
VGGEVTKNFETVPHTFRMYSLDNSYSKEDLEDWEKRVKKMIDGEVHYTCELKYDGASMSL
TYEDGKLVRAVTRGDGFQGDNVTTNIKTIKSVPLQLKGDYPQKFEIRGEIVLPYEGFIKM
NEERIANGEEPYKNPRNTASGSLKLQDSAEVAKRPLECLLYSLVGEKLPIKTQFESLEKA
RQWGFKVPDIAALAKSTDEVLAFVNYWDKHRHELPYETDGVVIKVNSLQQQEELGYTAKA
PRWAMAYKFKAEQVTTILEHITYQVGRTGAITPVANLQPVELAGTIVKRASLHNADQIAK
LDIREGDTVYVEKGGEIIPKIIGVDVTKRNTASAPTQYIAACPECDTLLVRAEGEAQHYC
PNSTGCPPQIIGRIQHFISRKAMDIEGLGGETVALLVENGLIENYADLYTLTTSQVIPLE
RMAAKSAENLVAGVAASKQIPFERVLFGLGIRYVGETVAKKLAKHFKSIDALMAASFEQL
IAVDEIGDRIAESVLEFFTSESHRTSIARLKEYGVQLSLSEEALANQTDTLAGNTFVVSG
VFTKVSRTELKKLIEDNGGKVSSSISSKTSYVVAGDNMGPSKRTKAETLGVAIISEDDFL
AML
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgaacaccgaagaacaaataaaccaacttcgcgcacagcttcgcgagcataactataat
tactacgtactagataatcctaccatttcagactacgattttgacctattgctgaaatcg
ttacaagcactagaaacagcacatcctgaattttacgatccaaactctccaacattaaga
gtagggggagaagtgactaagaattttgaaacggtgccgcatacgtttcgaatgtattcg
ctagataatagctattctaaagaagatcttgaagactgggaaaaacgggttaaaaaaatg
atagacggagaggttcactacacctgcgaactaaaatacgatggggcgtctatgagttta
acctatgaagatggtaagttagtaagagcggtaactagaggtgacggatttcaaggcgac
aatgtaaccacaaacataaaaaccattaagtcggtaccactacagctaaaaggagattat
ccacaaaaatttgagatacgaggcgaaattgttttgccctacgaaggttttattaaaatg
aacgaagagcgtatcgcaaatggtgaagaaccttataagaatccgcgtaacacagcctct
ggaagtcttaagctacaagatagtgcagaagttgctaaaagaccattagagtgcttgctg
tacagcctggtgggcgaaaagctgccaataaagacacaatttgaaagtttagaaaaagca
cgccagtggggatttaaagtaccagatattgctgctctagcgaaaagcaccgatgaggtc
ttagcatttgtaaattattgggacaaacatagacacgagctaccctacgagaccgatggt
gtagttattaaggttaatagcttacagcagcaagaagagctaggatacactgcaaaagcc
cctagatgggcaatggcttataaatttaaagcagaacaggtaacaacaatactcgagcat
ataacgtatcaagtgggtaggacaggagctattacgcctgttgctaatcttcaacctgtt
gagctggcaggtactattgtaaaaagagcttcgttgcataatgcagaccaaattgcgaaa
ttagatataagagaaggagatacggtatatgtagaaaaaggtggggaaattattcctaaa
attattggggtagacgttacaaagaggaacacagcttctgcgcctacccaatacattgct
gcctgcccggagtgtgacacacttttggttcgtgccgagggagaagcacagcattattgc
ccgaacagtactggttgtccgccacaaattatagggcgtattcaacactttatttctaga
aaagcgatggatattgaaggattgggcggtgaaactgtggcgctgcttgtagagaacggc
cttattgagaattacgccgatttgtacacgttaaccacctcacaggtgattccgttagag
cgtatggcagccaagagtgctgaaaatctagttgctggtgtggctgcatccaaacaaatt
ccgtttgaacgtgtgctctttggtctagggattcggtatgtaggcgaaacagtcgcaaaa
aaattggcaaagcactttaaaagtatcgatgcattgatggcagcatctttcgaacaactt
atagcggtagatgaaattggcgacagaattgccgaaagcgtgctcgagtttttcacttca
gaaagtcatagaacgagtatcgcaagactaaaagaatacggggtgcaactctcactttca
gaagaggcattggcaaatcagaccgatactttagcgggtaatacatttgtggtgtctggt
gtgtttacaaaagtttcgagaacagaattgaagaaactaattgaagataatggtggcaag
gtgtcatcgtctatatctagtaaaacaagctatgtagttgcaggagataacatggggcca
agtaaacgtacaaaagctgaaacattaggggtggctattatttctgaagatgatttttta
gctatgttatag
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integrated database retrieval system
