Mycolicibacterium gilvum PYR-GCK: Mflv_4248
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Entry
Mflv_4248 CDS
T00498
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mgi
Mycolicibacterium gilvum PYR-GCK
Pathway
mgi03030
DNA replication
mgi03410
Base excision repair
mgi03420
Nucleotide excision repair
mgi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mgi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Mflv_4248
03410 Base excision repair
Mflv_4248
03420 Nucleotide excision repair
Mflv_4248
03430 Mismatch repair
Mflv_4248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mgi03032
]
Mflv_4248
03400 DNA repair and recombination proteins [BR:
mgi03400
]
Mflv_4248
Enzymes [BR:
mgi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Mflv_4248
DNA replication proteins [BR:
mgi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Mflv_4248
DNA repair and recombination proteins [BR:
mgi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Mflv_4248
NER (nucleotide excision repair)
GGR (global genome repair) factors
Mflv_4248
MMR (mismatch excision repair)
DNA ligase
Mflv_4248
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Mflv_4248
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ABP46717
UniProt:
A4TDZ8
LinkDB
All DBs
Position
complement(4510045..4512183)
Genome browser
AA seq
712 aa
AA seq
DB search
MSPEAIPDPESMLAEQAHDALDPDLRRSWQELADEVREHQFRYYIRDAPIITDAEFDQLL
RRLQALEDEYPELRTPDSPTQLVGGAGFATDFTAAEHLERMLSLDNVFDLEELAAWAARI
RTEIGADAQYLCELKIDGVALALVYRDGRLERAATRGDGRTGEDVTLNARTIEDIPERLS
GTNEFPLPTVVEVRGEVFFRVADFEDLNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTAR
RRLRMICHGLGHVESSGGSPFPTLHDAYRALKAWGLPVSDHTAQVTGLDAVTERIAYWGE
HRHDVEHEIDGVVVKVDAVALQRRLGATSRAPRWAVAYKYPPEEAQTRLLDIRVNVGRTG
RVTPFAYMEPVKVAGSTVGLATLHNASEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLR
DGSEREFVFPTHCPECGSELAPAKEGDADIRCPNTRSCPAQLRERVFHVAGRGAFDIEGL
GYEAATALLQAGVIADEGDLFGLTADDLLRTELFTTKAGELSANGKRLLANLGKAKAQPL
WRVLVALSIRHVGPTAARALATEFGSLEAIETASEEQLAGTEGVGPTIAAAVIDWFTVDW
HRAIVDKWREAGVRMADERDASIERTLEGLSIVVTGSLAGFSRDEAKEAIIARGGKAAGS
VSKKTAYVVAGDAPGSKYDKAIELGVPVLDEDGFRRLLAEGPERDAEDGEPG
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
gtgagtcccgaggcgatcccggatcccgagtcgatgctggccgagcaagcccacgatgcg
ctcgaccccgacctgcgccgcagttggcaggagctcgccgacgaggtccgtgaacatcag
ttccgctactacatccgcgacgccccgatcatcaccgacgccgaattcgaccaactgctg
cgccggctacaggcgctcgaagacgagtatccggagctgcgcacgcccgactcgccgacc
cagctcgtcggcggggccgggttcgccaccgacttcaccgccgccgaacacctcgagcgc
atgctcagcctggacaacgtgttcgacctcgaggaactggccgcgtgggccgcacggatc
aggaccgagatcggcgcggacgcgcagtacctgtgcgagctcaagatcgacggtgtcgcg
ctggctctcgtctaccgcgacggacggctggagcgggcggcgacacggggggacggacgt
accggcgaggacgtcacgctcaacgcccgcacaatcgaagacatccctgaaaggctcagc
ggcacaaatgaattcccgttgcccaccgttgtggaggtgcgtggcgaggtcttcttccgg
gtcgccgacttcgaagacctgaacgccgggctggtcgccgagggcaagccgccgttcgcc
aacccgcgcaacagcgccgccggttcgctgcgccagaagaacccggccgtcacggcgcgc
cgccggttgcggatgatctgccacggactggggcatgtggagtcctccggaggttccccg
ttcccgacgctgcacgacgcctaccgcgcactcaaggcgtgggggctgccggtttccgac
cacaccgcccaggtcaccgggctcgacgcggtcaccgagcgcatcgcctactggggtgag
caccgccatgacgtcgaacacgaaatcgacggcgtggtggtcaaagtcgatgccgtggcg
ctgcaacgccgcctcggcgcgacctcgcgcgcaccgcggtgggcggtcgcctacaagtat
ccgcccgaagaggcccagaccagactgctcgacatccgggtcaacgtcgggcgcacagga
cgggtgacgcccttcgcctacatggagccggtcaaggtggccggttcgacggtcgggctg
gccacgctgcacaacgcgtcggaggtcaaacgcaaaggtgtgctgatcggcgacaccgtc
gtcatccgcaaggcgggcgacgtcatccccgaggtactgggacccgtcgtggacctacgc
gacggcagtgagcgcgaattcgtcttcccgacccactgtccggagtgcggaagcgagctg
gcccccgccaaggagggcgacgccgacatccgctgcccgaacacgcgcagttgcccggcg
cagttgcgggagagggtgtttcacgtcgccggtcggggggccttcgacatcgaggggctc
ggctacgaggcggcgacggcgctgctgcaggccggcgtcatcgccgatgagggtgacctg
ttcgggctcaccgcggacgacctgctgcgcaccgagttgttcaccaccaaggccggtgag
ctgtcggccaacggcaagcggctgctggccaacctgggcaaggccaaggcgcaaccgttg
tggcgcgtgctggtcgcactgtcgatccggcacgtgggcccgaccgcggcccgcgcgctg
gccaccgagttcggcagcctggaggccatcgagaccgcgtcggaggaacagctcgccggc
accgaaggcgtcgggccgacgatcgcggcggcggtcatcgactggttcaccgtcgactgg
caccgcgcgatcgtcgacaagtggcgcgaggccggggtccggatggccgatgaacgcgac
gccagcatcgaacgcacgctggaggggctctcgatcgtcgtgaccggatcgctggccggc
ttcagcagggacgaggccaaggaggcgatcatcgcgcgcggcggcaaggcggccggttcg
gtgtcgaagaagaccgcgtacgtcgtcgccggcgacgcgccgggatccaagtacgacaag
gcgatcgaactgggcgtacccgtcctcgacgaggacgggttccgtcgactgctcgcagaa
ggtccggagcgcgacgccgaggacggcgagccaggctag
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