Mucilaginibacter ginsenosidivorans: FRZ54_11130
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Entry
FRZ54_11130 CDS
T06123
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mgin
Mucilaginibacter ginsenosidivorans
Pathway
mgin03030
DNA replication
mgin03410
Base excision repair
mgin03420
Nucleotide excision repair
mgin03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mgin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FRZ54_11130 (ligA)
03410 Base excision repair
FRZ54_11130 (ligA)
03420 Nucleotide excision repair
FRZ54_11130 (ligA)
03430 Mismatch repair
FRZ54_11130 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mgin03032
]
FRZ54_11130 (ligA)
03400 DNA repair and recombination proteins [BR:
mgin03400
]
FRZ54_11130 (ligA)
Enzymes [BR:
mgin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FRZ54_11130 (ligA)
DNA replication proteins [BR:
mgin03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FRZ54_11130 (ligA)
DNA repair and recombination proteins [BR:
mgin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FRZ54_11130 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FRZ54_11130 (ligA)
MMR (mismatch excision repair)
DNA ligase
FRZ54_11130 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FRZ54_11130 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
BRCT_2
PTCB-BRCT
HHH
zf-NADH-PPase
RNA_ligase
HMBD
Motif
Other DBs
NCBI-ProteinID:
QEC63106
UniProt:
A0A5B8UXI1
LinkDB
All DBs
Position
complement(2430421..2432436)
Genome browser
AA seq
671 aa
AA seq
DB search
MSFEEAKKRIAALSAELKEHSYRYYVLAMPSISDFEFDKLLEELVALETQYPELIDPDSP
TQNVGGFITKEFQTVKHRWPMLSLGNTYNEQELVDFDQRIKKAIGDNFEYVCELKFDGLS
MSLTYDKGHLVRAVTRGDGTQGDEVTTNVKTIRSIPKRLHEGDYPDDFEIRGEVFMHLKA
FDRLNEERIENGEPPYANPRNFASGTIKLQDSAEVAKRPLDSFMYFLYTERRLFSTHWES
LQAVKSWGFPVNSESRLCGNIEEVLKFIGDWESKRFDLSYDIDGIVIKVNSYAQQEELGF
TAKSPRWAIAYKYKAQQVETELQSVSYQVGRTGAVTPVANLKPIFLAGTTVKRATLHNAN
EIIRLDLHEGDWVYVEKGGEIIPKIISVNLEKRKPGAAPIKYITNCPVCGTALERKEGEA
AFYCPNDEGCAPQIVGKMQHFTGRKVMNIDGLGDETIETLYEKGFICHISDIYDLHTKAD
QLKTMERFGEKSINNMLDGIEKSKQQPFEKVLFGLGIRYVGATVAKKLAMYFKTIDALMA
ASFDELNAVEEIGERIAKSVIEYFTDPQHRAEIEKLQAQGLQFTAEEKEVVLASDKLSGK
TFIISGTFAKSRDELKDIIEQNGGKILSSISAKLDYLVAGDNMGPAKLEKATKLNIPIIS
DEELMGMLGHD
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgaggaagcaaaaaaacgtatcgcggcgttatcggccgaactaaaggaacat
agttacaggtactatgtgctggccatgccatccatctcggattttgagtttgataagctg
ctggaagaactggttgcgctggaaacacagtaccccgagctgatagacccggattcgccg
acgcaaaatgtgggcgggtttattacgaaggagtttcagacggtaaagcaccgctggccc
atgttatcgctgggcaacacctataatgaacaggaactggtcgactttgatcagcgcatt
aaaaaagccataggcgataattttgaatacgtatgcgagctcaagttcgatgggctgtcc
atgagcctgacctatgacaagggccacctggtgcgcgccgtaacccgcggcgatggtacg
cagggcgacgaagtgaccaccaacgtaaaaaccatacgcagcatacccaagcgacttcac
gaaggcgactacccggatgatttcgagatacgcggcgaggtatttatgcacctgaaagca
tttgaccggctgaacgaggagcgcattgagaacggcgagccgccctatgccaacccaagg
aactttgcttcgggcaccatcaaactgcaagattcggccgaagtagccaaacgcccgctg
gatagctttatgtattttttatataccgaacgaaggctgttcagtacccattgggaaagt
ttacaagcggttaaaagctggggtttcccggtaaacagtgagagccggctttgcggtaat
atcgaagaagtattgaaatttattggcgactgggaaagcaaacgcttcgacctgagctat
gatatagatggcattgtaattaaagtaaacagctacgcgcagcaggaggagcttggtttt
acggccaaatcgccacgctgggccattgcctacaaatacaaggcgcaacaggtggaaacc
gagttgcaaagcgtaagctaccaggtgggtcgtaccggtgcggtaacgccggtggctaat
ttaaagccgatatttttagcaggaactacggtcaaacgtgccacactgcacaacgcgaat
gagatcatccggctcgatctgcacgaaggcgattgggtatacgtggaaaaggggggcgag
atcatccctaagatcatcagcgtaaacctggagaaacgcaaaccgggtgccgcgcctatc
aaatacattaccaattgcccggtatgcggcacggcattggaacgcaaggaaggcgaagcg
gcgttttactgccctaatgatgaaggctgcgccccacagatcgtcggtaaaatgcagcac
tttacagggcggaaggtgatgaatattgacgggctgggcgacgagacgatagagacgctt
tacgagaagggctttatctgccacataagcgatatatacgacctgcataccaaagccgat
cagctgaaaacgatggagcgctttggcgagaaatcgatcaacaatatgctggatgggata
gaaaaatcgaaacagcagccgtttgaaaaggtgttgtttggcttaggcatacgttatgtt
ggcgctacggtggcgaagaagctggcgatgtatttcaagacgatagatgctttaatggca
gcatcatttgacgaactaaacgccgtggaagagataggcgaacgcatagccaaaagcgtg
atagaatattttaccgacccgcagcaccgggctgaaatagaaaagctgcaggcccagggc
ctgcagtttactgccgaagaaaaagaagtggtactggccagcgataagctttcgggcaag
acatttattatatccgggacatttgccaaatcgcgcgatgaattgaaggacatcatcgag
caaaacggtggcaagatactgagcagtatatcggccaaattggattacctggtggcgggg
gataatatgggtccggctaagctggagaaggcgacgaaattgaacatccctataattagt
gatgaggagttgatggggatgctgggacacgattaa
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