Mucilaginibacter ginsenosidivorax: FSB76_08175
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Entry
FSB76_08175 CDS
T06204
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mgk
Mucilaginibacter ginsenosidivorax
Pathway
mgk03030
DNA replication
mgk03410
Base excision repair
mgk03420
Nucleotide excision repair
mgk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mgk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FSB76_08175 (ligA)
03410 Base excision repair
FSB76_08175 (ligA)
03420 Nucleotide excision repair
FSB76_08175 (ligA)
03430 Mismatch repair
FSB76_08175 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mgk03032
]
FSB76_08175 (ligA)
03400 DNA repair and recombination proteins [BR:
mgk03400
]
FSB76_08175 (ligA)
Enzymes [BR:
mgk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FSB76_08175 (ligA)
DNA replication proteins [BR:
mgk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FSB76_08175 (ligA)
DNA repair and recombination proteins [BR:
mgk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FSB76_08175 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FSB76_08175 (ligA)
MMR (mismatch excision repair)
DNA ligase
FSB76_08175 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FSB76_08175 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Auto_anti-p27
HHH
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QEC75925
UniProt:
A0A5B8VZ79
LinkDB
All DBs
Position
complement(1930992..1933007)
Genome browser
AA seq
671 aa
AA seq
DB search
MSPAEAKNQIQAISAELKQHNYNYYVLAMPTISDFDFDKKLEELNKLEKEFPEFLDPDSP
TQKVGGEVTKEFVTVRHRWPMLSLGNTYNEQELVEFDQRIRKAIGDSFEYVCELKFDGLS
MSLTYENGKLVRAVTRGDGTQGDEVTTNVRTIHSIPKKLTSGEYPDLFEIRGEVFMHLKA
FERLNKERTDNGEMTYANPRNFASGTMKLQDSAEVARRPLDCFLYGLYTEKTLFKTHWES
LEAVKSWGFHVDNHSRLCNDINGVLEFISHWDKERFNLSYDIDGIVIKVNNYSQQQELGF
TSKSPRWAISYKFKAERVETELLQVTYQVGRTGAVTPVANLKPVLLAGTTVKRATLHNAD
EITERLKLHEHDTVFVEKGGEIIPKIISVNLDKRKPDAKPIAYITHCPACETPLLRTEGE
AAWYCPNDEGCPPQIVGKMQHFIGRKAMNIDGLGDETIETLHSRGFINHISDIYDLHAHA
AELKQMGRFGEKSISNMLDGIEKSKQMPFEKVLFGLGIRYVGETVARKLAFHFKTIDKLM
AATEEELTAADEIGGRIAQSIAEYFSNEKHKQEIEKLKAAGLQFVAVEKEVTLASEKLAG
QSFIISGVFEKFSRDELKDIIEQNGGKILSSISAKLNYLVAGDNMGPAKLEKAQKLNIPI
ISDQELLDLIS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtcacccgccgaagctaaaaaccagatccaggccatcagcgccgaattaaagcagcac
aattacaattattatgtgctggccatgcctaccatcagcgattttgattttgataaaaag
ctggaagagttaaacaaactggaaaaggaattccccgaatttttagaccctgattcgccc
acacaaaaggtaggcggcgaagttaccaaagagtttgtaacggtaaggcaccgctggccc
atgctatcgttaggtaatacctacaacgagcaggaactggtagagtttgatcagcgcatc
cggaaggctattggcgatagttttgaatatgtttgtgagcttaagtttgacggcctgagc
atgagcttaacctacgaaaacggtaagctggtacgtgcagtaaccaggggcgacgggaca
caaggcgatgaagtaaccaccaatgtacgcaccatacacagcatacccaaaaaactgaca
tccggcgagtatcccgacctgttcgagattcgtggcgaggtgttcatgcacctgaaagct
tttgaacgtttgaataaagagcgtacagataatggcgaaatgacatacgccaacccccgc
aattttgcatcgggtactatgaaactacaggattcggccgaggttgccaggcggccgctg
gattgtttcctgtacggtttatataccgaaaaaacattgtttaaaactcattgggaaagc
ctggaagctgtaaaaagctggggctttcatgttgataaccatagcaggctttgcaacgac
attaacggcgtattagaatttataagtcactgggataaagagcggtttaacctgagttat
gatattgatggtattgttattaaagtaaacaattactcgcaacagcaggaattgggcttt
acatccaaatcgccgcgctgggccatatcctataaatttaaagccgagcgggtagaaacc
gaattattgcaggtaacttaccaggtaggccgcactggtgccgttacccctgttgccaat
ttaaaacccgtattgctggccggcacaacagtaaagcgcgccaccctgcacaatgctgat
gaaattaccgagcgccttaaattgcacgagcacgataccgtatttgttgaaaaaggaggg
gagattatccccaagatcattagcgttaatttggataagcgaaagcccgatgccaaacct
atagcatatataacccattgcccggcatgtgaaacgcccttactgcgcaccgaaggcgaa
gccgcgtggtattgccctaatgacgaaggctgcccgccgcaaattgtaggtaaaatgcag
cattttataggccgcaaggccatgaatattgatgggcttggcgacgaaaccatcgaaaca
ctacactcgcgtgggtttatcaaccacattagcgatatttatgatttgcatgcccatgct
gcagaattaaagcagatgggccggtttggcgaaaaatcaatcagcaacatgctggatggt
atcgaaaaatcaaaacagatgccatttgaaaaagtactgtttggattagggataaggtac
gttggcgaaaccgtagccaggaaactggctttccattttaaaaccattgataaactgatg
gctgcaaccgaagaggaacttaccgccgccgatgaaattggcggccggattgcccaaagc
attgccgaatactttagcaatgaaaaacataagcaggagatagagaaattaaaagccgcc
ggactacaatttgtagctgttgaaaaagaggtaaccctggccagcgaaaaactggcaggc
caaagctttatcatttcgggggtgtttgaaaagttttcgcgcgatgaactaaaagatatc
attgaacaaaatggcggcaaaattttaagcagtatttcggcaaagctaaattatcttgtt
gccggtgataacatgggtccagccaaactcgaaaaagcgcaaaaacttaatattccaatc
atcagcgaccaggagttgttagatttgatttcttaa
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