Mycolicibacterium goodii: AFA91_27745
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Entry
AFA91_27745 CDS
T04008
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mgo
Mycolicibacterium goodii
Pathway
mgo03030
DNA replication
mgo03410
Base excision repair
mgo03420
Nucleotide excision repair
mgo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mgo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AFA91_27745
03410 Base excision repair
AFA91_27745
03420 Nucleotide excision repair
AFA91_27745
03430 Mismatch repair
AFA91_27745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mgo03032
]
AFA91_27745
03400 DNA repair and recombination proteins [BR:
mgo03400
]
AFA91_27745
Enzymes [BR:
mgo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AFA91_27745
DNA replication proteins [BR:
mgo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AFA91_27745
DNA repair and recombination proteins [BR:
mgo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AFA91_27745
NER (nucleotide excision repair)
GGR (global genome repair) factors
AFA91_27745
MMR (mismatch excision repair)
DNA ligase
AFA91_27745
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AFA91_27745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AKS35062
UniProt:
A0A0K0XCI5
LinkDB
All DBs
Position
complement(5938248..5940353)
Genome browser
AA seq
701 aa
AA seq
DB search
MSEKATGEVEAELPEQPDADERRRWQELADEVREHQFRYYVRDAPIISDAEFDKLLRELQ
ALEEAHPELRTPDSPTQLVGGAGFATDFASAEHLERMLSLDNVFDSDELTAWAARISGET
GDAAHFLCELKIDGVALALVYRQGRLERAATRGDGRTGEDVTLNARTIDDIPERLAESDE
FPVPDVLEVRGEVFFRVADFEDLNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRKLR
MICHGIGHTEGFSPASLHDAYRALGAWGLPVSEHTTKVSSVAEVAERIAYWGEHRHDVEH
EIDGLVVKVDEVALQRRLGSTSRAPRWAVAYKYPPEEATTKLLDIRVNVGRTGRVTPFAY
MEPVKVAGSTVGLATLHNASEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGTEREF
VMPTHCPECGSPLAPAKEGDADIRCPNARSCPAQLRERLFHLAGRGAFDIEGLGYEAATA
LLAAQVIPDEGDLFTLTAEDLLRTELFTTKKGELSANGKRLLANLAKAREQPLWRVLVAL
SIRHVGPTAARALATEFGSLEAIEAASEEKLAAVEGVGPTIAAAVKDWFTVDWHRAIVDK
WRAAGVRMADERDADIERTLEGLSIVVTGSLPGFSRDQAKEAIISRGGKAASSVSKKTAY
VVAGDSPGSKYDKAVELGVPILDEDGFRRLLQEGPPGEPAE
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgagaaggcaaccggagaagtcgaagcggaactgccagaacagcccgatgccgac
gagcggcgccggtggcaggaacttgccgacgaggtgcgcgaacaccagttccgttattac
gtcagggacgcgccgatcatctccgacgcggagttcgacaagctgctgcgcgaactgcag
gcgctcgaagaggcccatccggagctgcggaccccggactcgcccacccagctcgtcggt
ggcgccgggttcgcgaccgacttcgcgtccgccgaacacctggaacggatgctgtcgctg
gacaatgtgttcgattccgacgagttgaccgcgtgggccgcccggatcagcggtgagacc
ggcgacgccgcgcatttcctgtgtgagctcaagatcgacggggtcgcgctggcgctggtg
taccgccagggtcgcctcgagcgggccgccacccgtggtgacgggcgcaccggtgaggac
gtcacgctcaatgcgcgcaccatcgacgacatccccgagcggctcgctgagagcgacgag
ttcccggtgcccgatgtgctcgaggtacgcggtgaggtcttcttccgggtcgccgacttc
gaggacctcaacgcgggcctggtcgccgagggcaagccgccgttcgccaacccgcgcaac
agcgcggcaggatcgctgcgtcagaagaaccccgcggtcaccgcgcgccgcaagctgcgc
atgatctgccacggcatcggccacaccgaagggttcagccccgcgtcgctgcacgacgcc
taccgcgcgctcggcgcgtgggggctgccggtgtccgagcacaccacgaaggtctccagc
gtcgccgaggtcgccgaacgcatcgcgtactggggcgagcaccgccacgacgtcgagcac
gagatcgacggcctcgtggtcaaggtcgacgaggtcgcgctgcaacgcaggctcgggtcg
acatcacgcgcgccccgctgggcggtggcctacaagtacccgccagaagaggcgaccacc
aagctgctcgacatccgcgtcaacgtcggccgcaccggacgggtcacgccgtttgcgtac
atggagccggtcaaggtcgccggatccaccgtgggcctggcaacactgcacaacgcctcc
gaggtcaaacgcaagggcgtgctgatcggcgacaccgtggtgatccgcaaggccggcgac
gtcatccccgaggtgctggggcccgtggtggatctgcgcgacggtaccgagcgtgaattc
gtcatgcccacccactgcccggagtgcggcagtccgctggctcccgccaaggagggcgac
gccgacatccgctgccccaacgcgcgcagctgccccgcgcagctgcgcgagcggctgttc
cacctcgccggccgcggcgccttcgacatcgaggggctgggctacgaggccgccacggca
ctgcttgccgcacaggtgatcccggacgagggagacctgttcaccctgaccgccgaggat
ctgctgcgcaccgagctgttcaccaccaagaagggtgagctctcggccaacggcaaacgc
ctgctggccaacctggccaaggccagggagcagccgttgtggcgggtactggtggcgctg
tccatccggcatgtcggtcccaccgcggcccgcgcgctggccaccgagttcggcagcctg
gaggccatcgaggcggcttcggaggagaagctggccgcggtggagggcgtcggaccgacc
atcgccgcggccgtcaaggactggttcacggtggactggcaccgcgcgatcgtcgacaag
tggcgcgccgcgggggttcgcatggccgacgagcgcgacgccgacatcgagcgcacgctc
gaagggttgtcgatcgtggtcaccggttcgctgcccgggttctcccgcgatcaggccaag
gaggcgatcatcagccgcggcggcaaggccgccagttcggtgtcgaagaagaccgcctat
gtggtggccggtgactccccgggatccaagtacgacaaggccgtcgagctcggcgtgccg
atcctcgacgaggacgggttccgcaggctgcttcaggaggggccgccgggcgaaccggcc
gagtag
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