Meleagris gallopavo (turkey): 100544042
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Entry
100544042 CDS
T01523
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X3
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
mgp
Meleagris gallopavo (turkey)
Pathway
mgp03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
mgp00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
100544042 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mgp03000
]
100544042 (KDM2B)
04121 Ubiquitin system [BR:
mgp04121
]
100544042 (KDM2B)
03036 Chromosome and associated proteins [BR:
mgp03036
]
100544042 (KDM2B)
Enzymes [BR:
mgp01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
100544042 (KDM2B)
Transcription factors [BR:
mgp03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
100544042 (KDM2B)
Ubiquitin system [BR:
mgp04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
100544042 (KDM2B)
Chromosome and associated proteins [BR:
mgp03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
100544042 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
100544042 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
LRR_At5g56370
LRR_4
Motif
Other DBs
NCBI-GeneID:
100544042
NCBI-ProteinID:
XP_010718418
Ensembl:
ENSMGAG00000004301
LinkDB
All DBs
Position
17:complement(5545495..5648415)
Genome browser
AA seq
1286 aa
AA seq
DB search
MKLSKKMKAEKDSGRRLRPVGRRRYDEHEDLSDVEEIVSVRSFNLEEKLKSKTYRGDFVH
SMDGKDFTFEYVQREALRVPLIFRNKDGLGIKMPDPDFTVRDVKLLVGSRRIVDVMDVNT
QRGVEMSMSQFVRYYETPEAQREKLYNVISLEFSHTKLENIVKRPNVVDLVDWVDNMWPQ
HLKERQTDATNAISEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIP
PTLQNLELYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVF
GGNILHSFNVPMQLRIYEIEDRTRVHAKFRYPFYYEMCWYVLERYVSCVTQRCHLSKEYQ
KESMLIDAKRKRSIDSYSSDSWLDMDEESCDAHIREEKDDSLDKNSKSLVDGSSSPNSTH
SEGKEGAGRKQKATVMRYLKRTLSNESDDSAKSATPTDYPKTPTGSPATEVSTKWTHLTE
FELKGLKALVEKLESLPENKKCVPEGIEDPQALLEDMKNILKEHADDDQNLAISGVPVVS
WPKKTPKNRAVGRPKGKLGAASAVKLAANRSTAGARRRRTRCRKCEACLRTECGECHFCK
DMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSIC
NEIIHPGCLKVKESDGVVNDELPNCWECPKCNHAGKTGKQKRGPGFKYASNLPGSLLKEQ
KMNRDNKEVTDAAKRKGDCEETPRRKSEEHSKKPQVDSILRRKSDEVHLRRKRKFEKPQE
PSMRKRRRSWKASDERSALLKPLRRLKQEPEDELPEAPPRSKDSDQSRSSSPTAGPSTEG
AEPRDKKKFKMRRKRRLPNKELSKELSKELNQEIQKTENSLANENHQPIKSEPESENEEP
KRALNNSERLHRFSKGLNGTPRELRHPLIPSLRSTPRGIARPPPSLSPPKCIQMERHVIR
PPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHRDLCICMRVCKTWNRWCCDKRLWTK
IDLNHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRLPGLRDLLLSGCSWIAV
SALCSSSCPLLRTLDVQWAEGLKDAQMRDLLSPPTDNRPGCNGCTLESMETLSSSSGKEQ
FCGSCHIRPDISSGQIDNRSKLRNIVELRLAGLDITDASLRLIIRHMPLLSKLNLSYCNH
VTDQSINLLTAVGTTTRDSLTEINLSDCNKVTDQCLSYFKRCGNICQIDLRYCKQVTKEG
CEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atgaaactctccaaaaaaatgaaggcggagaaggactctggaagaagattgcggcccgtt
ggtaggaggaggtacgatgagcacgaagacctctcggacgtggaggaaatcgtcagcgtc
aggagtttcaatctggaggagaaattaaagagcaaaacgtaccgcggggatttcgtgcac
tctatggatgggaaagattttacttttgagtatgtgcaaagagaagccctcagagttcca
cttatcttcagaaataaggatggactgggaattaaaatgcctgacccggatttcactgtc
agagatgtgaagctattagtgggaagtcgtcgaatagtggatgtgatggatgtgaacacg
caaagaggtgttgaaatgagcatgtcccagtttgtgagatactatgaaacgccagaggcc
cagcgtgaaaaactctacaacgtcatcagcttggagttcagtcatacaaagctggagaac
attgtcaagcgtcccaatgtggtggacttagttgactgggtggataatatgtggccacag
catttgaaggagagacagacagatgctaccaatgctatttcagagatgaaataccccaaa
gtgaaaaagtactgtttgatgagtgtgaaaggatgcttcactgattttcatattgatttt
ggaggcacttcagtgtggtatcacgttttccgtggggggaagatcttctggctgattccg
cctactctgcagaatctagaactttatgaagaatgggttctctctggaaagcaaagtgat
atctttctgggagacagggtggaacgatgccaaagaattgaactgaaacaaggctataca
ttcttcattccttcagggtggatacatgcggtttatactccagtagattctctggtgttt
ggtggaaatatcctgcatagctttaatgttcccatgcagcttcgcatctatgaaattgag
gacagaacaagggtgcatgccaaattccgttatcctttctactatgaaatgtgctggtat
gttctggagagatacgtgtcctgtgtgacccagcgctgccacctcagcaaagagtaccag
aaagaatcaatgttaattgatgcaaagagaaaacgcagcatagacagctattcatcagat
tcgtggttagacatggatgaagaatcttgtgatgctcatatccgggaggaaaaggatgac
agcttggataagaactccaaatccctggtggatggctcctcctcacccaacagcacacat
tcagaaggaaaagagggtgcggggagaaaacaaaaagccacagtaatgaggtacctaaaa
agaactttgtctaatgagtcagatgacagtgcaaaatcagcgacccccacggattatccc
aaaacaccaacggggtctccagctacagaagtttcaaccaaatggactcatctcacagaa
tttgaactgaagggattgaaagccctggtggaaaagcttgaatctctcccagagaacaag
aagtgtgttccagaaggcattgaagatccgcaggctctcctggaggacatgaagaacatt
ctgaaagaacatgctgatgatgaccaaaatcttgcgatttcgggtgtccctgtggtcagc
tggcccaagaagaccccaaagaacagggcggtcggacggcccaaagggaagctgggcgct
gcctctgcggtgaagctcgcagctaaccggagcacggccggggcacgccggaggaggacg
cgatgccgcaagtgcgaggcgtgcctgcggacagagtgtggcgagtgtcacttctgcaaa
gacatgaagaagtttggggggcctggcaggatgaaacagtcctgcattatgaggcagtgt
atcgcaccggtgttgcctcatactgctgtatgtctggtgtgtggagaagctgggaaagag
gacactgtggaagaggaggagagcaagtttaatctcatgctaatggaatgctccatttgt
aatgaaataatacacccaggatgccttaaggtgaaggaatcagatggtgtggttaacgac
gagctgccgaactgctgggagtgtccaaagtgcaaccatgcagggaaaactggaaaacaa
aagcgcggaccaggattcaaatacgcatcaaatctcccaggctcattgctgaaggaacag
aaaatgaacagagacaataaggaagtaacagatgctgcaaaacggaaaggggactgtgaa
gaaactcccaggcggaaatctgaggaacattccaaaaagcctcaagttgactcaattctg
aggagaaagtcagacgaagtacatctgcggaggaaaaggaaatttgagaaaccccaggaa
ccctctatgagaaaacggcggcgatcgtggaaggcttcggacgagcggagcgccctgctc
aaacccctgcggcgcctcaaacaggagccggaggacgagctgccggaagcgcctcctcgc
tccaaggacagcgaccagtcgcgatccagctcgcccaccgcgggtcccagcacagagggg
gccgagcccagggacaagaagaagttcaagatgaggcggaaaaggcggcttcccaataaa
gaactgagcaaggagctcagcaaggagctcaaccaagagatccaaaaaaccgagaacagc
cttgccaatgagaatcaccaacccatcaaatctgaacccgagagcgaaaacgaggaaccc
aagcgcgccttgaacaacagcgagagactccataggttcagcaaagggttgaacgggacg
ccccgggagctgaggcatccgctcatccccagccttcggagcacaccgcggggcatcgcc
cggcccccaccctcgctctctcctcccaaatgcattcagatggagcggcacgtcatccgg
ccgccccccatcagcccccctccggactcgctccccctggatgatggggcagcccatgtg
atgcagagggaagtctggatggctgtctttagctacctcagtcatagagacttgtgcatc
tgtatgagagtttgcaagacctggaacagatggtgctgtgacaaaagattatggaccaaa
atagatttaaaccattgtaaatccatcactccacttatgcttagtggcattattaggaga
cagcctgtaacccttgatcttagctggacaaatatatctaaaaagcagctgagctggctt
atcaacagactgccaggtcttcgagacctgctgttatcagggtgctcatggatagcagtg
tcagcactttgtagttccagctgccctttactccgaactctggacgtgcagtgggcagaa
ggcctgaaagacgctcagatgagagacctcctgtcaccgcccacagataaccggccaggc
tgcaacgggtgtactttagagagtatggaaacactttcttccagttcagggaaggagcag
ttctgtgggtcatgccacattcgcccggatatcagctcaggtcagatcgacaaccggagt
aaactacggaacatcgttgagctgcgcctggccggcctggatatcaccgatgcgtctttg
cggctgatcataaggcacatgcctctgctctccaaactcaatcttagttactgtaatcac
gtgacagatcagtctattaacctgctgaccgcagttggaactaccacgcgggattcatta
acagaaattaatttatcagactgcaataaggtgactgaccagtgcctgtcctatttcaaa
cgttgtggaaacatctgccagatcgacttgaggtactgcaagcaagtgacaaaagaaggc
tgtgagcagttcatagcagagatgtcagtaagtgttcagtttgggcaagtggaagaaaaa
cttctgcaaaaactgagttag
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integrated database retrieval system
