Mycoplasmoides gallisepticum WI01_2001.043-13-2P: HFMG01WIA_5251
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Entry
HFMG01WIA_5251 CDS
T02204
Symbol
lig
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mgw
Mycoplasmoides gallisepticum WI01_2001.043-13-2P
Pathway
mgw03030
DNA replication
mgw03410
Base excision repair
mgw03420
Nucleotide excision repair
mgw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mgw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HFMG01WIA_5251 (lig)
03410 Base excision repair
HFMG01WIA_5251 (lig)
03420 Nucleotide excision repair
HFMG01WIA_5251 (lig)
03430 Mismatch repair
HFMG01WIA_5251 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mgw03032
]
HFMG01WIA_5251 (lig)
03400 DNA repair and recombination proteins [BR:
mgw03400
]
HFMG01WIA_5251 (lig)
Enzymes [BR:
mgw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HFMG01WIA_5251 (lig)
DNA replication proteins [BR:
mgw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HFMG01WIA_5251 (lig)
DNA repair and recombination proteins [BR:
mgw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HFMG01WIA_5251 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HFMG01WIA_5251 (lig)
MMR (mismatch excision repair)
DNA ligase
HFMG01WIA_5251 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HFMG01WIA_5251 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Auto_anti-p27
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
AFP79308
UniProt:
J3VHL3
LinkDB
All DBs
Position
complement(897966..900113)
Genome browser
AA seq
715 aa
AA seq
DB search
MIEKKNESIKEIIEDLVKKLTKWEHEYYVLSNPSVSDEVYDSTYRTLLDYERKYPQYVLS
YSPTQRVGSSISNKFIKVKHDYLMLSLGNCFNFEELLNFNENIAKISKQEDNPYVLEPKI
DGLSISLIYLDGVLSEALTRGDGVVGESVIANIKTIKTIPLKINTTIKKIVIRGEVYVSN
QDFEVINASRDEDKKFANSRNYASGSLRNIDVSEVAKRKLNAFFYYIPNAYELGFETQYQ
VIQQLKEWGFNVAKEIKLFSNIKELYTSLKKLENNKNKLDYRIDGAVIKYNNFKDYETIG
YTSKFPKWAIAYKFAPTQVETQLKEIILSVGRTGKLTFVAQLAPIELEGSIITYATLHNL
EYINDLDIRINDYVYLIKAAEIIPKVIGVNLDKRPNNAKKLELDYNCPSCHQPLVKKPEE
VDWYCIYDQCKQKQLQYLIYYCSKPIMNIEGLSESTLALFFNTKVNDVIRECNELITNQN
VSEDLSLFKLLDNEEQTFVNNVLDIYQLERYKEIIIKPWLKKGFSKSSLKYNFRFQEKSF
DKLINSINESKNRELYRLLAALNIKYIGIATAKSIANTYHDIDQLKSLTVEDYMRLADIS
SITANSLFSFFSDEKNWELIEQLKTLSINTKDEINNDLVDSSSIYYDKKFVITGSFSISR
NDIIKKLSLKYKIKFVSGVSKNVDFVLAGNSPTAKKINQAKVLNIPIIQEEIWNK
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgattgaaaagaaaaatgaaagtattaaagagataatcgaagatttagttaaaaaatta
actaaatgggaacatgaatattatgttttatctaacccaagtgtttcagatgaagtgtat
gatagtacttatcgaactttactagattatgaaagaaaatacccacaatacgttttaagt
tattcccccactcaaagagtgggatcatcaattagcaataagttcattaaagttaaacat
gattacttgatgttatcattgggcaactgctttaattttgaagagttgcttaactttaat
gaaaatattgctaagataagtaaacaagaagataatccttacgtgttagaacctaagatt
gatggtttatcaatctcattaatttatcttgacggcgtgttatctgaagcacttactagg
ggtgatggggttgttggtgagagtgtgatagctaatatcaaaacaattaaaacaatccca
ttaaaaattaatacaacgatcaaaaagatcgttatccgtggagaggtctacgtaagcaat
caagactttgaagtaattaatgcttcaagagatgaagataagaagtttgcgaactctaga
aactatgcttctggaagtttaagaaacattgatgttagtgaagttgccaaacgtaaactt
aatgcgttcttttattatattcccaacgcttatgaactaggttttgaaacccagtatcaa
gtgatccaacagttaaaagaatgaggctttaatgttgctaaagagattaagttatttagc
aacattaaagaactttataccagtcttaaaaaactagaaaacaacaagaataaattagat
tatcgaatcgatggagctgtaatcaaatataacaacttcaaggattatgaaacaatcggt
tacacctctaagtttcccaaatgagcaatcgcttataagtttgccccaacacaagtagaa
acccaactaaaagagattattctaagtgtgggtagaactggcaaactaacttttgttgca
caactagccccaattgaattagaaggttcgattatcacttatgcaactttacataactta
gagtatatcaacgacctagatatcagaattaatgactacgtatatttaattaaggctgct
gagatcatccctaaggtgattggtgtaaatctagataaacgaccgaataatgctaaaaaa
cttgagcttgactacaactgtccaagttgtcatcaacctctagtaaaaaaacctgaagag
gttgattgatattgtatttatgatcaatgtaaacaaaagcaattgcaatatctaatctat
tattgttctaaaccaataatgaacattgaaggtttgagtgaaagcactttagctttattc
tttaatactaaagttaatgatgttattagagaatgtaatgaattaatcaccaatcaaaat
gttagtgaagatcttagtttatttaagttattagataatgaagagcaaacgtttgttaat
aacgttttagatatttatcaattagaacgatacaaagagattattatcaaaccttggctt
aagaaggggttttctaaatcatctttaaaatataactttagatttcaagagaaatcgttt
gataaattaattaacagtattaatgaatctaaaaaccgagaattatatcggttattggct
gcacttaatattaaatatattggaatagcaacagcgaagtcgattgctaatacatatcac
gatattgatcaacttaaaagcttaactgttgaagattacatgcgattagctgatattagc
agcataactgctaattcactatttagttttttctcagatgaaaaaaattgggaattaatt
gaacaattaaaaactttatcgattaacactaaagatgagattaataatgatttagttgat
agttcatctatctactatgataaaaagtttgtaatcactggttcttttagtatctcacga
aacgacattattaaaaaactatctttaaaatacaaaattaagtttgtaagtggtgtgtct
aaaaacgttgattttgttttagcgggtaacagtccgacagctaaaaaaattaaccaagcc
aaagtgctaaatattccgatcattcaagaagaaatctggaacaaatag
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