Mycoplasma haemofelis Langford 1: HF1_00820
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Entry
HF1_00820 CDS
T01418
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mha
Mycoplasma haemofelis Langford 1
Pathway
mha03030
DNA replication
mha03410
Base excision repair
mha03420
Nucleotide excision repair
mha03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HF1_00820 (ligA)
03410 Base excision repair
HF1_00820 (ligA)
03420 Nucleotide excision repair
HF1_00820 (ligA)
03430 Mismatch repair
HF1_00820 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mha03032
]
HF1_00820 (ligA)
03400 DNA repair and recombination proteins [BR:
mha03400
]
HF1_00820 (ligA)
Enzymes [BR:
mha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HF1_00820 (ligA)
DNA replication proteins [BR:
mha03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HF1_00820 (ligA)
DNA repair and recombination proteins [BR:
mha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HF1_00820 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HF1_00820 (ligA)
MMR (mismatch excision repair)
DNA ligase
HF1_00820 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HF1_00820 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
HHH
DNA_ligase_ZBD
HHH_3
PTCB-BRCT
RNA_pol_A_CTD
DUF3887
HTH_22
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
CBY92090
UniProt:
E8ZKC4
LinkDB
All DBs
Position
complement(91971..93959)
Genome browser
AA seq
662 aa
AA seq
DB search
MNIKEIIENLRKELKDLEEAYYAGDPKESDEVYDFKLRTLLNLEHKYPEYKTEDSPSNRV
GFYLNPENIKVHHDFPMLSLNNAFNNEELQSFFNQCEKERGELEYFLEPKVDGASISLIY
RKGYLHQAISRGDGEIGEDLTSKILQINSIPIKIESEDDITIRGEIYIRKSNFEAQRYDE
SSSKSFANHRNFVAGTLRLKKSEEISKKGLRVKAYSIVRAEEVGIDKQSQIIERIRELGL
ESHDPKETLISGNKEEIYSFIKAFEDIKKTSDIPYDGLVIKVNETSKWEDIGYTSKFPKW
AIAYKYPSLVKESKLLKIIPTVGRTGKITYSAQVEPVELDGSTVQFATLHNANYITELDL
RVGDYVSIYKSGEIVPRIIGFSRERRSEDLERWIPSTHCPSCNSELITKQNLSTQYCPNK
DCLEKKYAQFTYFSARGMANIEGLSIHIIMKLHSLGILQNLDDIYKIHQHRDTILNADLR
IKEKLLNKLIASIDKSRNRESHKILCGLGIEFIGEEVANLIFGHFGSIDEVLSASKEELM
SIDGIGEKCAESIIQWSSQQENIDLVKRLKEQGLFKNHSTFEVINSFVRGKRVVITGKFK
ISREELSSRLRNNYGVKIVGNISSKVDYLIAGEGAGSKLIKAKDLNIQILTESDITQLPK
WE
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
ttgaatattaaggagataattgagaatcttagaaaggaactaaaggatttagaggaagca
tactatgcaggggatcctaaggagagtgatgaggtttatgacttcaaattaagaacgctt
ttaaatttagaacacaagtatccagaatacaagacagaagattcccccagtaaccgagta
ggcttctacttaaatcccgaaaatataaaggtgcatcatgatttccccatgctgtcattg
aataatgctttcaataatgaagaactgcaatccttctttaatcaatgtgagaaggaaagg
ggggaattggagtactttttggagcctaaagtggatggtgcaagcataagcttaatatat
cgaaagggatatctgcatcaggccatcagtagaggggatggagaaataggcgaggattta
actagtaagattctgcaaattaactccatccccatcaaaatagagagtgaggatgatatt
accatcagaggagaaatatatattaggaaaagcaatttcgaagcccaaagatatgatgaa
tcctccagtaagtctttcgccaatcacaggaattttgttgccggaactttaaggcttaag
aagtctgaagaaatatcgaagaagggcttaagggtaaaggcctatagtatcgttagagcc
gaagaagtagggatagataagcaatctcagatcatagagaggattcgagagttggggtta
gaaagtcatgaccctaaagagactctaattagtggcaataaggaagaaatatatagcttt
ataaaggcatttgaagatatcaagaagacatcggatattccctatgatggattggttatt
aaagttaatgagacttccaaatgggaagatattggatacactagtaaatttcccaaatga
gctatagcttacaagtatccctccctagtaaaagaaagtaagctcctgaagataattcca
accgtcggaagaacaggaaagatcacttattcagctcaagtggagcctgtggaattggat
ggaagcactgtccaattcgccactttgcataatgccaattacataactgaattagatttg
agagtgggagactatgtctccatttataaatcgggagagatagttcccagaataataggg
ttctccagagaaaggagatcggaggatttagagagatgaattccttctacccactgtcca
agctgtaattctgagttaataactaagcagaatttatcaacccagtactgccccaataag
gattgcctagaaaagaagtatgctcaatttacctacttctccgctcggggaatggccaat
atagaagggctatctattcatatcatcatgaagctacacagtctagggatacttcagaat
ttagatgacatatataagatacatcaacatagagataccatcctgaatgctgatctcagg
ataaaggagaagcttcttaataagctcatagcctcaatcgataagtcaaggaatcgagag
agtcataagattctgtgtggattgggaattgagttcattggagaggaggtggctaactta
atattcggacattttggaagcatagatgaagtcctatctgcatctaaagaagaattaatg
agtatagatggcattggcgagaagtgtgcagagtccataatacagtgatcttcccagcag
gagaatatagatctggttaagcgattaaaagaacagggactatttaagaatcacagcacc
tttgaagtaataaatagctttgttaggggtaaaagggtggtgataactgggaaatttaag
atctctagagaagagctttcttctagacttagaaataattatggggttaaaatagtagga
aatataagttctaaggttgactatctgattgcaggagaaggcgctggctctaaactcata
aaagctaaagatttaaatatacagatacttacagaaagcgacataactcaattgcctaaa
tgagaataa
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