Mycobacterium hainanense: ACEL92_18930
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Entry
ACEL92_18930 CDS
T11348
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mhaf Mycobacterium hainanense
Pathway
mhaf03030
DNA replication
mhaf03410
Base excision repair
mhaf03420
Nucleotide excision repair
mhaf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mhaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACEL92_18930 (ligA)
03410 Base excision repair
ACEL92_18930 (ligA)
03420 Nucleotide excision repair
ACEL92_18930 (ligA)
03430 Mismatch repair
ACEL92_18930 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mhaf03032
]
ACEL92_18930 (ligA)
03400 DNA repair and recombination proteins [BR:
mhaf03400
]
ACEL92_18930 (ligA)
Enzymes [BR:
mhaf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACEL92_18930 (ligA)
DNA replication proteins [BR:
mhaf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACEL92_18930 (ligA)
DNA repair and recombination proteins [BR:
mhaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACEL92_18930 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACEL92_18930 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACEL92_18930 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACEL92_18930 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
HHH_8
Motif
Other DBs
NCBI-ProteinID:
XGI08519
LinkDB
All DBs
Position
complement(4068924..4071005)
Genome browser
AA seq
693 aa
AA seq
DB search
MSSAEADPVSPEVRRQWQELADEVRQHQFRYYVKDAPIVSDAEFDKMFNDLVALEERHPE
LRVPDSPTQLVGGAGFATDFTEAEHLERMLSLDDVFDRDELVAWSNRVENEIGREPHYLC
ELKIDGAALSLVYRDGRLERAATRGDGRVGEDVTLNARTIDDVPERLTPGADLPIPAVLE
VRGEVFFMLADFEALNASLVEDGKAPFANPRNSAAGSLRQKNPAVTARRKLRMICHGIGR
TDGFAPKSLHEAYTALKAWGLPVAEETARVRGLAAVEDRIGYWGEHRYDLDHEIDGVVVK
VDDFALQRRLGTTSRAPRWAVAYKYPPQEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAG
STVGLATLHNAAEVKRKGVLIGDTVMIRKAGDVIPEVLGPVVDLRDGSEREFVMPTTCPE
CGTTLAPAKEGDADIRCPNARSCPAQLRERVFHVAGRGAFDIEGLGYEAAIALLKAGVIA
DEGDLFTLTEDDLLRTELFRTKAGALSANGRRLLDNLDKAKTVALWRVLVALSIRHVGPT
AARALATEFGSLDAITSASTEQLAAVEGVGPTIAAALTEWFAVDWHRAIVDKWRAAGVRM
ADERDASVPRTLEGLTVVVTGSLTGFSRDDAKEAIIARGGKAAGSVSKKTDYVVAGDAPG
SKYDKAVELGVPVLDEDGFRKLLAEGPPEAPAG
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
gtgagctcagcagaagctgatccggtgtcgcccgaggtccggcggcagtggcaggaactg
gccgacgaagtccgtcagcaccagttccgctactacgtcaaggacgccccgatcgtctcc
gacgccgagttcgacaagatgttcaacgaccttgtcgcgcttgaggagcgtcacccggag
ctgcgggtcccggattctccgacgcagctggtcggcggcgccgggttcgccaccgacttc
accgaggccgagcatctcgagcggatgctgagcctggacgacgtgttcgaccgcgacgag
ctggtcgcctggagcaatcgcgtcgagaacgagatcggccgcgagccccattacctgtgt
gaactcaagatcgacggggcggcgttgtcgctggtctaccgcgatggccggctggaacgc
gccgccacgcgcggcgacggccgggtgggcgaggacgtgacgctcaacgcccgcaccatc
gacgacgttcccgagcggctcacccccggtgccgacttgcccatcccggccgtcctcgag
gtgcggggcgaggtcttcttcatgctcgccgatttcgaggcgctcaacgccagcctggtc
gaggacggcaaggcgccgttcgccaatccgcgaaacagtgcggccggttcgctgcgccag
aagaaccccgcggtcaccgcccggcgcaagctgcgaatgatctgccacggcatcggccgc
accgacgggttcgcacccaagtccctgcacgaggcctacaccgcgctgaaagcctggggt
ctgcccgtggccgaggaaaccgcacgcgttcgtggcctggccgcggtggaggaccggatc
gggtattggggtgagcaccgctacgacctcgaccacgaaatcgacggcgtggtggtcaaa
gtcgatgacttcgcgttgcaacgccggctggggacgacgtcacgggcgccgcggtgggcg
gtggcctacaagtatccgccgcaggaagcgcagaccaagctgctcgacatccgggtcaac
gtcgggcgcaccgggcgcgtcacgccgttcgctttcatgacgccggtgaaggtggccggg
tcgaccgtggggttggccaccctgcacaacgccgccgaggtcaagcgcaagggggtgctg
atcggcgacacggtgatgatccgcaaggccggcgacgtcatcccggaggtgctcggtccc
gtcgtggacctgcgggacggctccgaacgcgaattcgtcatgccgacaacatgtcccgaa
tgcggcaccacgctggcccccgccaaggagggcgatgcggacatccggtgccccaacgcg
cggtcctgcccggcgcaactgcgtgagcgcgtcttccacgtcgccggtcggggagcgttc
gacatcgaggggctgggctacgaggcggccatcgcgctgctgaaagccggggtgatcgcc
gatgagggcgacctgttcaccctcaccgaggacgacctgttgcgcaccgaactcttccgg
accaaggccggcgcgttgtccgccaacggcaggcgcctgctcgacaacctggacaaggcc
aagacggtggcgctgtggcgggtcctggtggcgctgtcgatccggcatgtcggcccgacg
gcggcgcgtgcactggccaccgagttcggcagcctggacgcgatcacgtcggcgtcaact
gagcagctggccgcggtcgagggggtcgggccgacgatcgccgccgcgctcaccgagtgg
ttcgccgtcgactggcatcgcgcgatcgtcgacaagtggcgggccgccggggtgcggatg
gccgacgagcgtgacgccagcgtgccccgcacgctggaggggctgacggttgtcgtcacc
ggttcgctgaccggtttttcgcgcgacgacgccaaggaggcgatcatcgcccgcggcgga
aaagccgcgggttcggtgtcgaagaagaccgactacgtcgtcgccggcgacgcgccgggt
tccaagtacgacaaggcggtggaactgggcgtgccggtgctcgacgaggacgggttccgg
aaactgttggccgagggcccgccggaagccccggcgggctag
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