Microbispora hainanensis: OHB01_30950
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Entry
OHB01_30950 CDS
T09710
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mhai
Microbispora hainanensis
Pathway
mhai03030
DNA replication
mhai03410
Base excision repair
mhai03420
Nucleotide excision repair
mhai03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mhai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OHB01_30950 (ligA)
03410 Base excision repair
OHB01_30950 (ligA)
03420 Nucleotide excision repair
OHB01_30950 (ligA)
03430 Mismatch repair
OHB01_30950 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mhai03032
]
OHB01_30950 (ligA)
03400 DNA repair and recombination proteins [BR:
mhai03400
]
OHB01_30950 (ligA)
Enzymes [BR:
mhai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OHB01_30950 (ligA)
DNA replication proteins [BR:
mhai03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OHB01_30950 (ligA)
DNA repair and recombination proteins [BR:
mhai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OHB01_30950 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OHB01_30950 (ligA)
MMR (mismatch excision repair)
DNA ligase
OHB01_30950 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OHB01_30950 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
HHH_3
UPF0758_N
BRCT_2
DUF8054_C
Motif
Other DBs
NCBI-ProteinID:
WUP81321
LinkDB
All DBs
Position
complement(6677978..6680065)
Genome browser
AA seq
695 aa
AA seq
DB search
MTEAPPIDAIPDEVAYAEAVRLAADAAAAYYGDGTSSLDDDAYDRLVRGIAAYERAHPDQ
VLEESPTGKVAGVVGDVPHIVPMLSLDNVFGPEELASWAASLERRLGRPVTAWSVEPKLD
GLAIAARYRDGRLVQLVTRGDGSAGEDVSHAIGTIVGLPGRLADPVTVELRGEVMMTARQ
FEEACAKRQAHDGTTFANPRSAAAGTLRAQDRPYVCELTFFGYGALPLPDDTSGLATRLR
ESPHSQVMDWVAGQGVQTTAETAVAGIVATSVEQVQRRVEEIAAARPELPFGIDGIVIKA
DDAADQAQAGSGSRAPRWAIAYKLPAVQKITKLLGVEWNTGRTGVIAPRAVLEPVELDGS
VVTYATLHNPADIGRRGLMLGDSVVVYKAGDVIPRVESPVVHLRTGDEQPIVFPEVCPAC
EGEIDTSQERWRCVRGRDCRAIASIRYAVGRDQLDVEGLADNRIQQMLDAALIADFGDLF
FLTREQLLDLERMGEVSTDNLLAAIDRARTRPLSRVFCALGVRGTGRSMSRRIARHFGTM
EAIRAADAEALQQVDGIGPEKAPVIVAELAELGDLIDKLVRAGVNMVEPGVAAVAGDVGG
TTIPAPDDQEQGALPLTGMTVVVTGAMSGRLAALSRNEMNELVERAGGRASSSVSAKTSL
VVAGDNAGSKRAKAESLGVRIVAPEEFAEMVAHLL
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgactgaagcgcccccgatcgacgcgatccccgacgaggtcgcctacgccgaggcggta
cggctggcggccgacgcggcagcggcctactacggcgacggaacctcctcgttggacgac
gacgcctacgacaggctcgtccgcggcatcgccgcctacgagagggcccaccccgatcag
gtgctggaggagtcgccgacgggcaaggtcgccggagtcgtgggcgatgtcccgcacatc
gtgcccatgctcagcctcgacaacgtgttcgggccggaggagctcgcgagctgggcggcc
tcgctggagcgccggctgggccgtccggtgaccgcgtggtcggtggagccgaagctggac
gggctggcgatcgccgcccgttatcgtgacggccgcctcgtccagctggtcacccgcggc
gacgggagcgcgggcgaggacgtctcccacgcgatcggcacgatcgtcggcctgcccggg
cggctggccgacccggtcacggtggagctgcgcggcgaggtgatgatgaccgcgcggcag
ttcgaggaggcgtgcgcgaaacggcaggcgcacgacgggacgacgttcgcgaacccgcgc
agcgccgccgcgggcacgctgcgggcgcaggaccggccgtacgtatgcgagctgacgttc
ttcgggtatggggcgctgccgctgcccgacgacacctccggcctcgcgacgcggctgcgg
gagtcgccgcacagccaggtgatggactgggtcgccggtcagggggtgcagaccacggcc
gagaccgcggtcgccgggatcgtcgcgacgagtgtggagcaggtgcagcggcgggtcgag
gagatcgcggccgcgcggccggagctgccgttcgggatcgacggcatcgtgatcaaggcg
gatgacgcggccgaccaggcgcaggccgggtccggctcgcgggcgccgcggtgggcgatc
gcctacaagctgcccgccgtgcagaagatcacgaagctgctcggcgtggagtggaacacc
gggcgcaccggtgtgatcgccccgcgcgcggttctggagccggtggagctggacggctcc
gtcgtgacgtacgcgacgctgcacaaccccgcggacatcgggcggcgtgggctgatgctg
ggggacagcgtggtcgtctacaaggcgggcgacgtgatcccgagagtggagtccccggtg
gtgcacctgcgcaccggcgacgagcagcccatcgtgttccccgaggtgtgcccggcctgc
gaaggcgagatcgacacctcccaggagcggtggagatgcgtgcgaggccgcgactgccgt
gcgatcgcctcgatccgatacgcggtcggccgcgaccagctcgacgtggaggggctggcc
gacaaccgcatccagcagatgctggacgccgccttgatcgccgacttcggcgacctgttc
ttcctcacccgcgagcagctgcttgacctggagcggatgggggaggtgtccaccgacaac
ctcctggccgccatcgacagggccaggacgaggccgctgagccgggtgttctgcgcgctc
ggggtcagggggacggggcgctcgatgagccgccgcatcgcccggcacttcggcacgatg
gaggccatccgcgcggccgacgccgaggcgctccagcaggtggacggcatcggcccggag
aaggcgcccgtgatcgtcgccgagctggccgagctgggcgacctcatcgacaagctcgtc
cgtgccggggtgaacatggtcgagcccggtgtggcggcggtggccggtgacgtgggcggc
acgaccatcccggctccggatgatcaggagcagggtgcgctgccgctgaccgggatgacg
gtcgtggtcaccggcgcgatgagcgggcgcctggcggcgttgtcccgcaacgagatgaac
gagctcgtcgaacgggccggaggccgggcctcgtccagcgtttccgcgaagacctcgttg
gtcgtcgcgggagacaacgcgggatccaagcgggccaaggccgagtccctgggcgtgcgg
atcgtcgcccccgaggagttcgccgagatggtcgcgcacctgttgtag
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