Mariluticola halotolerans: L1P08_01065
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Entry
L1P08_01065 CDS
T09219
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mhar
Mariluticola halotolerans
Pathway
mhar03030
DNA replication
mhar03410
Base excision repair
mhar03420
Nucleotide excision repair
mhar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mhar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L1P08_01065 (ligA)
03410 Base excision repair
L1P08_01065 (ligA)
03420 Nucleotide excision repair
L1P08_01065 (ligA)
03430 Mismatch repair
L1P08_01065 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mhar03032
]
L1P08_01065 (ligA)
03400 DNA repair and recombination proteins [BR:
mhar03400
]
L1P08_01065 (ligA)
Enzymes [BR:
mhar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
L1P08_01065 (ligA)
DNA replication proteins [BR:
mhar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
L1P08_01065 (ligA)
DNA repair and recombination proteins [BR:
mhar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
L1P08_01065 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L1P08_01065 (ligA)
MMR (mismatch excision repair)
DNA ligase
L1P08_01065 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
L1P08_01065 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
SHOCT
Motif
Other DBs
NCBI-ProteinID:
UJQ95900
LinkDB
All DBs
Position
212712..214820
Genome browser
AA seq
702 aa
AA seq
DB search
MMDDGVENLGVEAAKAELDRLHEALSAADIAYHQQDMPEITDAEYDAMKQRYLAIEVAFP
QLKRADSLGEKVGAAPAEGFAKVTHAIPMLSLGNAFSDEDVEEFVQRGRKFFGREKDLQL
DFTAEPKIDGLSASLRYENGVFVQGATRGDGAVGEDITANLETIADIPHKLKGSGWPEVI
EIRGEVYMTHAQFQALNERSAATGGQIYVNPRNTAAGSLRQLDSSVTAQRNLKFFAYAWG
FTSAPFAETQFEAVNKLADWGFAINPLMIRTASVADMLKHYHEIEVQRATLGYDIDGVVY
KLDRLDLQQRWGFVARAPRWAIAHKFPAEQATTILEAIDIQVGRTGALTPVARLKPVTVG
GVVVENATLHNEDEINRKDVRVGDTVVVQRAGDVIPQIVSVVDDEAHQAREKYVFPTICP
ACGSPAEREVNAKTGKLDVIRRCTGELVCPAQAVEQLKHFVSRNALDIDGLGDKQVTAFY
EEGRILHAADIFTLAERDAKSLKRLKDQDGWGETSVKKLFAAIDARREPELDRFIFALGI
RHVGETTAALFAKTYGTFEAFRAAAIAAAAHEGDAYESFLSVDGIGETVAQSVISFFGNE
RNQLALDALAAEVTPKEYVVRVSANSEVAGKTVVFTGSLEKMSRSEAKAMAERLGGKVSG
SVSAKTDIVVAGPGAGSKLKKAEELGLEVLDEDGWLELVARS
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
ctgatggacgatggagtcgaaaatctcggggtcgaggcagcaaaggctgagctggaccgg
ttgcatgaggcgctgagcgcggcggatatcgcctatcatcagcaagacatgcctgaaatc
accgacgctgaatatgacgcgatgaagcagcgttatctggcgattgaggtggcttttccg
caattgaagcgcgcggacagtcttggtgaaaaggtgggggcggcaccggcagaaggcttt
gccaaagtcactcatgccatccccatgctcagccttggcaatgcgttctcggatgaggac
gttgaggaattcgtgcagcgcgggcgcaaattttttgggcgcgagaaggatttgcagctc
gattttaccgccgagccgaagattgacgggctttccgcctcgctgcggtatgagaatggc
gtgtttgtgcaaggggcgacgcgcggcgatggcgcggtgggtgaggatattaccgccaat
ctcgagaccattgccgatataccccataaactaaagggtagtggctggccggaggttatt
gaaattcgtggcgaggtctatatgacccacgcgcaatttcaggcgttgaatgaacgttcg
gcggcaacaggcggacagatttatgttaatccgcgcaataccgctgcggggtcgttgcgc
cagctggattcctctgtaacagcgcagcggaacctcaagttctttgcttatgcctggggc
tttacctctgcgccgtttgccgagacgcagtttgaggcggtcaacaagctggctgactgg
ggttttgccatcaatccgctgatgatccgcacggccagtgttgcggacatgctgaagcat
tatcacgagatcgaggtgcagcgggcgacgcttggctatgatatcgacggggttgtctac
aagcttgaccggctggatttgcagcagcgctggggctttgtggcgcgggcgccgcgctgg
gcgattgcacacaagtttcccgccgagcaggcaacgaccattcttgaagccatcgatatt
caggtggggcgcactggcgcgctgacgccggtggcgcggctgaaacctgtgacggtgggt
ggcgtggtggtggaaaacgcgacgctgcacaatgaagacgagatcaaccgcaaggatgtg
cgggtgggcgacaccgtggtggtgcagcgggccggggatgtgatcccgcagattgtttcc
gtcgtggatgatgaggcgcatcaggcgcgggaaaaatatgtgtttccaacgatttgtccg
gcctgcgggtcaccggcggagcgggaggtcaacgccaaaaccggcaagctggatgtgatc
cggcggtgtaccggcgaactggtttgtccggcgcaggcggtggagcagctcaagcatttc
gtctcgcgtaatgcgctggatatcgacgggttgggcgacaagcaggtgacggcgttttat
gaagagggccggatattgcatgcggcggatatctttacgctggccgagcgggatgccaag
tcgctgaaacgattgaaagatcaggatggctggggcgagacctcggtcaaaaagctgttc
gcggcgattgatgcgcggcgggagcctgagcttgaccggttcatttttgcgctcggaatt
cgccatgtgggcgagacgacggcggcgctgtttgccaagacctatggcacgtttgaggcg
ttccgggcggccgcgattgccgctgctgcccatgagggcgatgcctatgagagctttttg
tcggttgatggtatcggtgagacggtggcgcagtcggttatcagcttttttgggaatgag
cgcaatcagttggcgctggacgcgctcgccgcggaagtgacgccgaaagaatatgtcgtc
agggtttcggcgaacagtgaagtggctggaaagactgtggtttttaccggttcgctggag
aaaatgtcccgttctgaagccaaggctatggcggagcggctggggggcaaggtgtcggga
tcggtgtcggccaagaccgatattgtggtggccgggccgggggctggatccaagctgaaa
aaggcggaagagctgggccttgaagtgctggacgaggatggctggctggaactggtggcg
cgtagctga
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