Micromonospora halotolerans: RMN56_05090
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Entry
RMN56_05090 CDS
T09415
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mhaw
Micromonospora halotolerans
Pathway
mhaw03030
DNA replication
mhaw03410
Base excision repair
mhaw03420
Nucleotide excision repair
mhaw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mhaw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RMN56_05090 (ligA)
03410 Base excision repair
RMN56_05090 (ligA)
03420 Nucleotide excision repair
RMN56_05090 (ligA)
03430 Mismatch repair
RMN56_05090 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mhaw03032
]
RMN56_05090 (ligA)
03400 DNA repair and recombination proteins [BR:
mhaw03400
]
RMN56_05090 (ligA)
Enzymes [BR:
mhaw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RMN56_05090 (ligA)
DNA replication proteins [BR:
mhaw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RMN56_05090 (ligA)
DNA repair and recombination proteins [BR:
mhaw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RMN56_05090 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RMN56_05090 (ligA)
MMR (mismatch excision repair)
DNA ligase
RMN56_05090 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RMN56_05090 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
HHH_8
HHH_3
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
WNM40727
UniProt:
A0ABY9ZZY0
LinkDB
All DBs
Position
complement(1113267..1115402)
Genome browser
AA seq
711 aa
AA seq
DB search
MSEEAIPQAVSPAQEAAAGAEPTPEARERHATLSQELTEHQYRYYVLDAPTISDAEFDKQ
LRELEALEEQYPALRTPDSPTQRVGGTFSTDFTPVTHAERMLSLDNAFADEELAAWAERV
ERDAGGPVPYLCELKVDGLAINLTYEKGRLVRAATRGDGRTGEDVTANVRSIRDVPARLT
PSDDFPDVPEFLEVRGEIYFPVAAFADLNAGLVEQGKAPFANPRNAAAGSLRQKDPRITA
SRPLRLVVHGIGARRGFQPAAQSESYAALRAWGLPTSDRWRVVPDLAGVAEYIAYYAEHR
HDVEHEIDGVVVKVDPVSIQGRLGSTSRAPRWAIAFKYPPEEVTTKLLDIDVNVGRTGRV
TPFAVLEPVRVAGSTVALATLHNAREVERKGVLIGDTVVLRKAGDVIPEVLGPVVDLRPA
DARPFVMPTACPACGTPLAPAKEGDVDIRCPNSRSCPAQLRERVFHLAGRGAFDIEVLGY
KGAAALLDAGIIQDEGDLFALDAEQLSRSPFFVNKDGTLGSNATKLLDNLAVAKERELWR
VLVALSIRHVGPTAAQALARHFRSVEAIDAASEEELSSVDGVGPTIAASIKEWFAVDWHR
EVVRKWAESGVRMAEEAGEEGPRPLEGVTVVVTGTLAGFSRDQASEAIQSRGGKVTGSVS
KKTGFVVVGDNPGSKADKAADLKLPILDEEGFRVLLESGPDAAREVARVEG
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgaagaagcgattccccaggcggtcagccccgcgcaggaggcggcggccggcgcc
gagccgaccccggaggcgcgggagcggcacgccacgctgagccaggagctcaccgagcac
cagtaccgctactacgtgctggacgcgccgaccatctccgacgccgagttcgacaagcag
ctgcgggagctggaggcgctcgaggagcagtacccggcgctgcgcacccccgactcgccg
acccagcgcgtcggcggcaccttctccaccgacttcaccccggtcacccacgccgagcgg
atgctctcgctcgacaacgccttcgccgacgaggagctggcggcctgggccgagcgggtc
gagcgggacgccggcggcccggtgccctacctgtgcgagctgaaggtcgacggcctggcc
atcaacctgacctacgagaaggggcggctggtccgggccgcgacccggggtgacgggcgc
acgggtgaggacgtcaccgccaacgtgcgcagcatccgggacgtgccggcccggctgacg
ccctccgacgacttccccgacgtgccggagttcctcgaggtgcgcggcgagatctacttc
ccggtggccgccttcgccgacctcaacgccggcctggtcgagcagggcaaggcgccgttc
gccaacccgcgcaacgcggccgccggcagcctgcgccagaaggacccacggatcaccgcc
tcccggccgctgcgcctggtggtgcacggcatcggcgcccgccggggcttccagccggcc
gcgcagtccgagtcctacgcggcgctcagagcgtgggggctgccgaccagcgaccgctgg
cgggtggtgcccgacctggccggggtggcggaatacatcgcctactacgccgagcaccgg
cacgacgtcgagcacgagatcgacggcgtggtggtcaaggtcgaccccgtctccatccag
gggcggctcggctcgaccagccgcgcgccgcgctgggccatcgccttcaagtacccgccg
gaggaggtcaccaccaagctgctcgacatcgacgtcaacgtcgggcgcaccggccgggtc
accccgttcgccgtcctcgaaccggtccgggtggccggctccacggtcgccctggccacc
ctgcacaacgcccgcgaggtcgagcgcaagggcgtgctcatcggcgacacggtggtgctg
cgcaaggccggcgacgtcatccccgaggtgctcggcccggtggtcgacctgcgcccggcc
gacgcccgcccgttcgtcatgcccaccgcctgcccggcctgcggcaccccgctcgcgccg
gccaaggagggcgacgtcgacatccggtgccccaactcgcgcagctgcccggcgcagctc
cgggagcgggtcttccacctggccggtcggggcgcgttcgacatcgaggtactcggctac
aagggcgccgccgcgctgctcgacgccgggatcatccaggacgagggtgacctgttcgcg
ctcgacgccgagcagctctcccgctcgccgttcttcgtcaacaaggacggcacgctgggc
agcaacgcgaccaagctgctcgacaacctggccgtggccaaggagcgggagctctggcgg
gtgctggtcgcgctctccatccggcacgtcggcccgaccgcggcgcaggcgctcgcccgg
cacttccgctcggtcgaggcgatcgacgcggccagcgaggaggagctgtcctcggtggac
ggcgtcggcccgaccatcgcggccagcatcaaggagtggttcgccgtcgactggcaccgc
gaggtggtgcgcaagtgggccgagtccggcgtgcggatggccgaggaggccggcgaggag
ggcccgcgcccgctcgaaggggtgaccgtggtggtcaccggcacgctggccgggttcagc
cgtgaccaggcgtccgaggcgatccagagccggggcggcaaggtcaccggctcggtctcg
aagaagaccggcttcgtggtggtgggcgacaaccccggctccaaggccgacaaggccgcc
gacctcaagctgccgatcctcgacgaggagggcttccgggtgctgctggagtccggcccg
gacgcggcccgcgaggtggcccgcgtcgaggggtga
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